MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:280.8 nTPM
HPA Brain:282.2 nTPM
GTEx:280.8 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Mouse:588.5 nTPM
Allen mouse:22.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.0
2411 Female, age 72, unknown 280.9
1827 Male, age 72, unknown 274.5
2586 Male, age 75, left hemisphere 274.5
2019 Male, age 18, unknown 251.8
2828 Female, age 72, unknown 234.4
1870 Female, age 42, unknown 221.9
2666 Male, age 74, left hemisphere 212.2
2219 Male, age 76, both hemispheres 212.1
1833 Male, age 53, unknown 204.0
1830 Male, age 51, unknown 183.9
Dorsal raphe nucleus
nTPM: 266.7
2298 Female, age 72, unknown 356.6
2047 Male, age 72, unknown 279.5
1828 Male, age 53, unknown 255.8
2750 Male, age 76, both hemispheres 239.7
2016 Female, age 72, unknown 202.1
Inferior colliculus
nTPM: 256.3
2097 Female, age 72, unknown 339.0
1890 Male, age 53, unknown 256.6
1848 Female, age 42, unknown 240.0
2849 Male, age 72, unknown 189.6
Median raphe nucleus
nTPM: 267.4
2220 Male, age 76, midline 267.4
Periaquaductal grey, anterior
nTPM: 271.7
1947 Male, age 18, unknown 286.3
2502 Female, age 75, unknown 265.1
1795 Male, age 51, unknown 263.7
Periaquaductal grey, dorsal
nTPM: 209.4
1840 Male, age 53, unknown 241.5
1831 Male, age 72, unknown 208.5
2464 Female, age 72, unknown 207.6
2850 Male, age 76, both hemispheres 180.0
Periaquaductal grey, lateral
nTPM: 191.5
2272 Male, age 74, both hemispheres 202.7
2053 Male, age 18, unknown 192.2
2140 Male, age 76, both hemispheres 179.5
Pretectal area
nTPM: 263.4
1816 Male, age 51, unknown 345.7
2007 Male, age 72, unknown 335.2
1817 Female, age 42, unknown 323.9
1944 Female, age 72, unknown 313.3
2667 Female, age 75, unknown 294.6
1815 Male, age 53, unknown 260.3
2224 Female, age 72, unknown 237.5
2273 Male, age 74, both hemispheres 218.5
2825 Male, age 18, unknown 204.9
2316 Male, age 76, right hemisphere 192.2
2407 Male, age 75, both hemispheres 171.4
Red nucleus
nTPM: 222.5
1821 Female, age 72, unknown 288.6
2725 Female, age 75, unknown 244.5
1954 Female, age 42, unknown 240.0
2785 Male, age 18, unknown 235.3
2588 Male, age 74, left hemisphere 224.8
2503 Female, age 72, unknown 221.1
2769 Male, age 72, unknown 214.8
2227 Male, age 72, unknown 213.8
1904 Male, age 53, unknown 207.7
2823 Male, age 76, right hemisphere 201.7
1865 Male, age 51, unknown 197.8
2584 Male, age 75, left hemisphere 179.9
Substantia nigra
nTPM: 282.2
1916 Female, age 42, unknown 420.4
1851 Male, age 51, unknown 324.0
1889 Female, age 72, unknown 315.0
2241 Male, age 72, unknown 311.6
1941 Male, age 53, unknown 303.1
2665 Male, age 74, both hemispheres 258.3
2409 Female, age 72, unknown 237.3
2699 Male, age 18, unknown 228.3
2590 Female, age 75, unknown 215.2
2583 Male, age 75, right hemisphere 209.1
Superior colliculus
nTPM: 225.4
2087 Female, age 72, unknown 304.1
2261 Male, age 18, unknown 275.0
1796 Male, age 53, unknown 263.6
2668 Female, age 75, unknown 229.3
1895 Male, age 76, right hemisphere 213.1
2664 Male, age 75, both hemispheres 207.0
2587 Male, age 74, left hemisphere 206.9
1839 Male, age 51, unknown 206.3
1913 Female, age 42, unknown 180.7
1995 Male, age 72, unknown 167.9
Ventral tegmental area
nTPM: 268.6
1915 Female, age 42, unknown 324.6
2410 Female, age 72, unknown 307.0
2218 Male, age 76, both hemispheres 288.3
1942 Male, age 51, unknown 262.1
2223 Female, age 72, unknown 219.6
2021 Male, age 53, unknown 209.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 280.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 280.8
Samples: 183

Max nTPM: 570.2
Min nTPM: 101.9
Std nTPM: 91.7
Median nTPM: 268.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 570.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 557.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 514.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 508.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 496.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 493.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 493.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 483.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 482.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 477.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 471.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 588.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 588.5
Samples: 4

Max nTPM: 594.2
Min nTPM: 573.7
Sample A Male 594.2
Sample B Male 592.3
Sample C Female 573.7
Sample D Female 593.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.0
513469 Antisense, RP_040810_01_F11, Mouse strain C57BL/6J (56 days, male) 22.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo