MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.3 nTPM
HPA Brain:76.0 nTPM
GTEx:47.3 nTPM
FANTOM5:162.2 Scaled Tags Per Million
Pig:87.1 nTPM
Mouse:71.6 nTPM
Allen mouse:6.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.2
2666 Male, age 74, left hemisphere 82.0
2586 Male, age 75, left hemisphere 80.5
2828 Female, age 72, unknown 74.3
2019 Male, age 18, unknown 71.3
1870 Female, age 42, unknown 70.7
1827 Male, age 72, unknown 69.7
2411 Female, age 72, unknown 69.2
1830 Male, age 51, unknown 68.3
1833 Male, age 53, unknown 64.3
2219 Male, age 76, both hemispheres 51.3
Dorsal raphe nucleus
nTPM: 61.0
2750 Male, age 76, both hemispheres 67.1
1828 Male, age 53, unknown 64.0
2047 Male, age 72, unknown 61.9
2016 Female, age 72, unknown 57.7
2298 Female, age 72, unknown 54.4
Inferior colliculus
nTPM: 60.1
2849 Male, age 72, unknown 63.5
1890 Male, age 53, unknown 61.7
2097 Female, age 72, unknown 58.2
1848 Female, age 42, unknown 57.1
Median raphe nucleus
nTPM: 59.0
2220 Male, age 76, midline 59.0
Periaquaductal grey, anterior
nTPM: 65.9
1947 Male, age 18, unknown 67.7
1795 Male, age 51, unknown 67.2
2502 Female, age 75, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 59.8
2850 Male, age 76, both hemispheres 65.7
1831 Male, age 72, unknown 61.4
1840 Male, age 53, unknown 57.3
2464 Female, age 72, unknown 54.6
Periaquaductal grey, lateral
nTPM: 60.8
2140 Male, age 76, both hemispheres 63.0
2053 Male, age 18, unknown 60.2
2272 Male, age 74, both hemispheres 59.2
Pretectal area
nTPM: 64.7
1817 Female, age 42, unknown 79.1
2007 Male, age 72, unknown 77.5
1815 Male, age 53, unknown 72.5
1816 Male, age 51, unknown 70.7
2407 Male, age 75, both hemispheres 64.9
2825 Male, age 18, unknown 61.9
1944 Female, age 72, unknown 61.4
2316 Male, age 76, right hemisphere 61.3
2667 Female, age 75, unknown 59.7
2224 Female, age 72, unknown 54.1
2273 Male, age 74, both hemispheres 49.1
Red nucleus
nTPM: 75.7
2823 Male, age 76, right hemisphere 84.5
2584 Male, age 75, left hemisphere 82.6
2588 Male, age 74, left hemisphere 82.4
1821 Female, age 72, unknown 78.4
2725 Female, age 75, unknown 78.2
2503 Female, age 72, unknown 73.6
2785 Male, age 18, unknown 73.3
2769 Male, age 72, unknown 72.9
1954 Female, age 42, unknown 72.1
1865 Male, age 51, unknown 70.0
1904 Male, age 53, unknown 70.0
2227 Male, age 72, unknown 70.0
Substantia nigra
nTPM: 76.0
1916 Female, age 42, unknown 88.2
2583 Male, age 75, right hemisphere 85.0
1851 Male, age 51, unknown 82.7
1941 Male, age 53, unknown 81.9
2699 Male, age 18, unknown 75.8
2665 Male, age 74, both hemispheres 73.6
1889 Female, age 72, unknown 73.4
2590 Female, age 75, unknown 70.9
2241 Male, age 72, unknown 65.7
2409 Female, age 72, unknown 62.8
Superior colliculus
nTPM: 65.6
2668 Female, age 75, unknown 75.9
2587 Male, age 74, left hemisphere 69.6
1913 Female, age 42, unknown 67.9
2261 Male, age 18, unknown 66.9
1796 Male, age 53, unknown 66.6
1895 Male, age 76, right hemisphere 65.9
1995 Male, age 72, unknown 62.8
2087 Female, age 72, unknown 61.5
1839 Male, age 51, unknown 61.1
2664 Male, age 75, both hemispheres 57.9
Ventral tegmental area
nTPM: 67.9
2410 Female, age 72, unknown 78.7
1915 Female, age 42, unknown 72.0
2218 Male, age 76, both hemispheres 66.5
1942 Male, age 51, unknown 64.9
2223 Female, age 72, unknown 64.2
2021 Male, age 53, unknown 61.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 47.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.3
Samples: 183

Max nTPM: 91.5
Min nTPM: 26.5
Std nTPM: 10.8
Median nTPM: 45.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 84.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 82.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 71.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 70.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 68.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 68.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 67.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 66.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 65.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 65.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 162.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.2
FF:10158-103A5 76 years, female 162.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.9
Samples: 4

Max nTPM: 95.9
Min nTPM: 81.0
Sample A Female 81.0
Sample B Female 82.6
Sample C Male 95.9
Sample D Male 84.0
Midbrain
nTPM: 80.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 73.9
Sample A Female 82.3
Sample B Female 82.5
Sample C Male 83.8
Sample D Male 73.9
Periaqueductal gray
nTPM: 75.2
Samples: 3

Max nTPM: 79.0
Min nTPM: 68.2
Sample B Female 78.4
Sample C Male 79.0
Sample D Male 68.2
Superior colliculi
nTPM: 87.1
Samples: 4

Max nTPM: 93.5
Min nTPM: 78.2
Sample A Female 78.2
Sample B Female 93.5
Sample C Male 85.6
Sample D Male 90.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.7
Samples: 4

Max nTPM: 82.1
Min nTPM: 63.0
Sample A Male 69.7
Sample B Male 63.0
Sample C Female 82.1
Sample D Female 71.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69529280 Antisense, RP_050421_03_H07, Mouse strain C57BL/6J (56 days, male) 6.2

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