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BETA
  • SUMMARY

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  • PIK3CD
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:13.8 nTPM
Monaco:134.1 nTPM
Schmiedel:159.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

13.8
HPA sample nTPM
Memory B-cell
nTPM: 13.2
Samples: 6

Max nTPM: 33.8
Min nTPM: 0.2
P10809_1017 33.8
P10809_1025 13.3
P10809_1044 0.2
P10809_1063 10.1
P10809_1092 11.0
P10809_1105 10.9
Naive B-cell
nTPM: 13.8
Samples: 6

Max nTPM: 27.7
Min nTPM: 6.8
P10809_1011 27.7
P10809_1029 10.2
P10809_1048 6.8
P10809_1067 12.4
P10809_1091 13.1
P10809_1104 12.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

134.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 107.3
Samples: 4

Max nTPM: 152.1
Min nTPM: 88.2
RHH5310_R3677 91.9
RHH5218_R3590 152.1
RHH5247_R3619 88.2
RHH5276_R3648 97.1
Naive B-cell
nTPM: 134.1
Samples: 4

Max nTPM: 177.6
Min nTPM: 89.4
RHH5308_R3675 89.4
RHH5216_R3588 177.6
RHH5245_R3617 157.7
RHH5274_R3646 111.8
Non-switched memory B-cell
nTPM: 115.6
Samples: 4

Max nTPM: 129.3
Min nTPM: 95.1
RHH5309_R3676 116.0
RHH5217_R3589 129.3
RHH5246_R3618 121.8
RHH5275_R3647 95.1
Plasmablast
nTPM: 12.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 9.2
RHH5312_R3679 10.7
RHH5220_R3592 13.6
RHH5249_R3621 15.9
RHH5278_R3650 9.2
Switched memory B-cell
nTPM: 109.8
Samples: 4

Max nTPM: 123.9
Min nTPM: 101.2
RHH5311_R3678 106.3
RHH5219_R3591 101.2
RHH5248_R3620 123.9
RHH5277_R3649 107.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

159.9
Schmiedel sample id TPM
Naive B-cell
TPM: 159.9
Samples: 91

Max TPM: 254.9
Min TPM: 66.4
B_CELL_NAIVE_1 254.9
B_CELL_NAIVE_2 232.2
B_CELL_NAIVE_3 229.9
B_CELL_NAIVE_4 229.7
B_CELL_NAIVE_5 228.1
B_CELL_NAIVE_6 224.2
B_CELL_NAIVE_7 223.2
B_CELL_NAIVE_8 218.8
B_CELL_NAIVE_9 218.1
B_CELL_NAIVE_10 211.4
B_CELL_NAIVE_11 208.3
B_CELL_NAIVE_12 204.8
B_CELL_NAIVE_13 203.7
B_CELL_NAIVE_14 203.5
B_CELL_NAIVE_15 202.9
B_CELL_NAIVE_16 202.9
B_CELL_NAIVE_17 202.3
B_CELL_NAIVE_18 199.2
B_CELL_NAIVE_19 198.9
B_CELL_NAIVE_20 198.5
B_CELL_NAIVE_21 198.0
B_CELL_NAIVE_22 197.1
B_CELL_NAIVE_23 190.9
B_CELL_NAIVE_24 190.2
B_CELL_NAIVE_25 189.7
B_CELL_NAIVE_26 188.8
B_CELL_NAIVE_27 185.7
B_CELL_NAIVE_28 185.2
B_CELL_NAIVE_29 185.0
B_CELL_NAIVE_30 184.5
B_CELL_NAIVE_31 183.7
B_CELL_NAIVE_32 183.0
B_CELL_NAIVE_33 182.8
B_CELL_NAIVE_34 181.5
B_CELL_NAIVE_35 174.8
B_CELL_NAIVE_36 174.1
B_CELL_NAIVE_37 174.1
B_CELL_NAIVE_38 172.8
B_CELL_NAIVE_39 171.9
B_CELL_NAIVE_40 167.2
B_CELL_NAIVE_41 166.4
B_CELL_NAIVE_42 165.8
B_CELL_NAIVE_43 164.4
B_CELL_NAIVE_44 163.4
B_CELL_NAIVE_45 162.1
B_CELL_NAIVE_46 162.0
B_CELL_NAIVE_47 161.2
B_CELL_NAIVE_48 157.2
B_CELL_NAIVE_49 156.7
B_CELL_NAIVE_50 156.5
B_CELL_NAIVE_51 156.4
B_CELL_NAIVE_52 156.4
B_CELL_NAIVE_53 156.1
B_CELL_NAIVE_54 156.1
B_CELL_NAIVE_55 153.5
B_CELL_NAIVE_56 153.3
B_CELL_NAIVE_57 152.0
B_CELL_NAIVE_58 151.3
B_CELL_NAIVE_59 150.5
B_CELL_NAIVE_60 149.6
B_CELL_NAIVE_61 149.6
B_CELL_NAIVE_62 148.3
B_CELL_NAIVE_63 146.9
B_CELL_NAIVE_64 146.7
B_CELL_NAIVE_65 141.2
B_CELL_NAIVE_66 134.0
B_CELL_NAIVE_67 133.9
B_CELL_NAIVE_68 133.5
B_CELL_NAIVE_69 129.4
B_CELL_NAIVE_70 128.8
B_CELL_NAIVE_71 125.0
B_CELL_NAIVE_72 123.9
B_CELL_NAIVE_73 121.9
B_CELL_NAIVE_74 119.2
B_CELL_NAIVE_75 115.9
B_CELL_NAIVE_76 109.5
B_CELL_NAIVE_77 107.1
B_CELL_NAIVE_78 105.9
B_CELL_NAIVE_79 103.2
B_CELL_NAIVE_80 102.3
B_CELL_NAIVE_81 102.3
B_CELL_NAIVE_82 98.7
B_CELL_NAIVE_83 93.3
B_CELL_NAIVE_84 92.8
B_CELL_NAIVE_85 89.2
B_CELL_NAIVE_86 89.0
B_CELL_NAIVE_87 74.4
B_CELL_NAIVE_88 72.3
B_CELL_NAIVE_89 72.1
B_CELL_NAIVE_90 68.7
B_CELL_NAIVE_91 66.4
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