A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.7
nTPM
Monaco:
163.4
nTPM
Schmiedel:
143.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
HPA sample
nTPM
Classical monocyte nTPM: 24.0
Samples: 6
Max nTPM: 60.0
Min nTPM: 7.2
P10809_1003
60.0
P10809_1020
16.0
P10809_1039
7.2
P10809_1058
18.4
P10809_1080
21.4
P10809_1107
21.2
Intermediate monocyte nTPM: 23.7
Samples: 6
Max nTPM: 42.2
Min nTPM: 13.2
P10809_1004
42.2
P10809_1023
13.2
P10809_1042
22.6
P10809_1061
28.7
P10809_1081
17.1
P10809_1108
18.6
Non-classical monocyte nTPM: 29.7
Samples: 5
Max nTPM: 52.1
Min nTPM: 12.2
P10809_1005
44.8
P10809_1053
20.9
P10809_1072
52.1
P10809_1082
12.2
P10809_1109
18.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.4
Monaco sample
nTPM
Classical monocyte nTPM: 156.8
Samples: 4
Max nTPM: 190.5
Min nTPM: 126.5
RHH5313_R3680
137.5
RHH5221_R3593
190.5
RHH5250_R3622
172.8
RHH5279_R3651
126.5
Intermediate monocyte nTPM: 142.4
Samples: 4
Max nTPM: 221.9
Min nTPM: 105.9
RHH5314_R3681
123.2
RHH5222_R3594
221.9
RHH5251_R3623
105.9
RHH5280_R3652
118.7
Non-classical monocyte nTPM: 163.4
Samples: 4
Max nTPM: 209.7
Min nTPM: 142.2
RHH5315_R3682
142.7
RHH5223_R3595
209.7
RHH5252_R3624
142.2
RHH5281_R3653
158.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.9
Schmiedel sample id
TPM
Classical monocyte TPM: 134.4
Samples: 91
Max TPM: 192.8
Min TPM: 80.2
MONOCYTES_1
192.8
MONOCYTES_2
184.2
MONOCYTES_3
179.2
MONOCYTES_4
177.8
MONOCYTES_5
176.5
MONOCYTES_6
170.8
MONOCYTES_7
170.6
MONOCYTES_8
170.6
MONOCYTES_9
170.4
MONOCYTES_10
170.1
MONOCYTES_11
164.8
MONOCYTES_12
164.4
MONOCYTES_13
162.6
MONOCYTES_14
162.3
MONOCYTES_15
162.1
MONOCYTES_16
160.6
MONOCYTES_17
160.5
MONOCYTES_18
158.9
MONOCYTES_19
158.4
MONOCYTES_20
157.6
MONOCYTES_21
157.3
MONOCYTES_22
154.3
MONOCYTES_23
153.4
MONOCYTES_24
152.6
MONOCYTES_25
151.9
MONOCYTES_26
151.3
MONOCYTES_27
151.0
MONOCYTES_28
150.9
MONOCYTES_29
149.1
MONOCYTES_30
148.5
MONOCYTES_31
146.1
MONOCYTES_32
144.0
MONOCYTES_33
143.7
MONOCYTES_34
143.5
MONOCYTES_35
143.4
MONOCYTES_36
143.3
MONOCYTES_37
143.0
MONOCYTES_38
142.6
MONOCYTES_39
139.5
MONOCYTES_40
137.5
MONOCYTES_41
134.8
MONOCYTES_42
134.2
MONOCYTES_43
134.1
MONOCYTES_44
133.2
MONOCYTES_45
132.4
MONOCYTES_46
132.0
MONOCYTES_47
131.2
MONOCYTES_48
130.8
MONOCYTES_49
128.4
MONOCYTES_50
128.0
MONOCYTES_51
128.0
MONOCYTES_52
127.7
MONOCYTES_53
126.6
MONOCYTES_54
126.5
MONOCYTES_55
124.9
MONOCYTES_56
124.8
MONOCYTES_57
124.6
MONOCYTES_58
124.1
MONOCYTES_59
122.8
MONOCYTES_60
122.8
MONOCYTES_61
122.3
MONOCYTES_62
122.1
MONOCYTES_63
122.0
MONOCYTES_64
121.4
MONOCYTES_65
120.9
MONOCYTES_66
120.7
MONOCYTES_67
120.7
MONOCYTES_68
118.1
MONOCYTES_69
117.0
MONOCYTES_70
116.3
MONOCYTES_71
115.6
MONOCYTES_72
114.0
MONOCYTES_73
113.8
MONOCYTES_74
112.1
MONOCYTES_75
108.5
MONOCYTES_76
108.3
MONOCYTES_77
107.5
MONOCYTES_78
105.1
MONOCYTES_79
104.5
MONOCYTES_80
102.6
MONOCYTES_81
101.5
MONOCYTES_82
101.5
MONOCYTES_83
101.3
MONOCYTES_84
101.2
MONOCYTES_85
97.1
MONOCYTES_86
94.6
MONOCYTES_87
93.8
MONOCYTES_88
91.9
MONOCYTES_89
89.9
MONOCYTES_90
87.0
MONOCYTES_91
80.2
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Non-classical monocyte TPM: 143.9
Samples: 90
Max TPM: 211.6
Min TPM: 68.5
M2_1
211.6
M2_2
209.2
M2_3
205.4
M2_4
202.7
M2_5
201.2
M2_6
192.9
M2_7
192.2
M2_8
187.3
M2_9
187.1
M2_10
182.0
M2_11
181.1
M2_12
180.9
M2_13
179.1
M2_14
178.6
M2_15
178.3
M2_16
178.2
M2_17
176.7
M2_18
175.3
M2_19
175.0
M2_20
173.7
M2_21
173.1
M2_22
170.5
M2_23
169.9
M2_24
168.8
M2_25
168.2
M2_26
166.9
M2_27
166.3
M2_28
164.6
M2_29
164.2
M2_30
162.9
M2_31
161.5
M2_32
161.0
M2_33
159.6
M2_34
159.2
M2_35
158.3
M2_36
157.7
M2_37
157.4
M2_38
155.5
M2_39
154.9
M2_40
152.4
M2_41
151.9
M2_42
151.8
M2_43
150.4
M2_44
150.1
M2_45
148.0
M2_46
146.7
M2_47
146.2
M2_48
145.3
M2_49
145.2
M2_50
144.7
M2_51
141.8
M2_52
138.8
M2_53
135.2
M2_54
135.0
M2_55
132.2
M2_56
131.9
M2_57
131.7
M2_58
129.5
M2_59
129.5
M2_60
129.1
M2_61
125.6
M2_62
121.8
M2_63
121.5
M2_64
121.2
M2_65
119.9
M2_66
119.5
M2_67
119.3
M2_68
118.2
M2_69
116.0
M2_70
114.9
M2_71
113.4
M2_72
111.6
M2_73
111.0
M2_74
107.8
M2_75
105.3
M2_76
104.7
M2_77
104.2
M2_78
103.6
M2_79
102.7
M2_80
102.6
M2_81
102.0
M2_82
99.1
M2_83
96.9
M2_84
95.9
M2_85
90.8
M2_86
87.2
M2_87
85.3
M2_88
76.0
M2_89
70.9
M2_90
68.5
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