A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
126.2
nTPM
Monaco:
337.7
nTPM
Schmiedel:
35.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.2
HPA sample
nTPM
Memory B-cell nTPM: 126.1
Samples: 6
Max nTPM: 147.4
Min nTPM: 70.2
P10809_1017
133.3
P10809_1025
144.8
P10809_1044
70.2
P10809_1063
131.3
P10809_1092
129.8
P10809_1105
147.4
Naive B-cell nTPM: 126.2
Samples: 6
Max nTPM: 151.2
Min nTPM: 110.0
P10809_1011
110.0
P10809_1029
124.4
P10809_1048
143.5
P10809_1067
113.8
P10809_1091
114.3
P10809_1104
151.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
337.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 269.2
Samples: 4
Max nTPM: 356.4
Min nTPM: 166.3
RHH5310_R3677
356.4
RHH5218_R3590
328.0
RHH5247_R3619
226.1
RHH5276_R3648
166.3
Naive B-cell nTPM: 250.0
Samples: 4
Max nTPM: 352.2
Min nTPM: 123.8
RHH5308_R3675
283.4
RHH5216_R3588
352.2
RHH5245_R3617
123.8
RHH5274_R3646
240.6
Non-switched memory B-cell nTPM: 303.4
Samples: 4
Max nTPM: 381.8
Min nTPM: 184.2
RHH5309_R3676
339.4
RHH5217_R3589
381.8
RHH5246_R3618
308.1
RHH5275_R3647
184.2
Plasmablast nTPM: 151.3
Samples: 4
Max nTPM: 194.7
Min nTPM: 103.2
RHH5312_R3679
154.5
RHH5220_R3592
194.7
RHH5249_R3621
152.9
RHH5278_R3650
103.2
Switched memory B-cell nTPM: 337.7
Samples: 4
Max nTPM: 433.4
Min nTPM: 205.5
RHH5311_R3678
433.4
RHH5219_R3591
370.8
RHH5248_R3620
341.0
RHH5277_R3649
205.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.8
Schmiedel sample id
TPM
Naive B-cell TPM: 35.8
Samples: 91
Max TPM: 68.3
Min TPM: 14.9
B_CELL_NAIVE_1
68.3
B_CELL_NAIVE_2
63.6
B_CELL_NAIVE_3
63.2
B_CELL_NAIVE_4
63.0
B_CELL_NAIVE_5
61.6
B_CELL_NAIVE_6
60.4
B_CELL_NAIVE_7
60.2
B_CELL_NAIVE_8
57.3
B_CELL_NAIVE_9
56.9
B_CELL_NAIVE_10
53.0
B_CELL_NAIVE_11
51.7
B_CELL_NAIVE_12
50.9
B_CELL_NAIVE_13
49.9
B_CELL_NAIVE_14
48.4
B_CELL_NAIVE_15
47.8
B_CELL_NAIVE_16
47.5
B_CELL_NAIVE_17
47.0
B_CELL_NAIVE_18
46.5
B_CELL_NAIVE_19
45.8
B_CELL_NAIVE_20
44.2
B_CELL_NAIVE_21
44.1
B_CELL_NAIVE_22
44.0
B_CELL_NAIVE_23
42.9
B_CELL_NAIVE_24
42.7
B_CELL_NAIVE_25
40.7
B_CELL_NAIVE_26
40.5
B_CELL_NAIVE_27
39.7
B_CELL_NAIVE_28
39.6
B_CELL_NAIVE_29
39.5
B_CELL_NAIVE_30
38.9
B_CELL_NAIVE_31
38.8
B_CELL_NAIVE_32
38.5
B_CELL_NAIVE_33
38.5
B_CELL_NAIVE_34
38.5
B_CELL_NAIVE_35
38.4
B_CELL_NAIVE_36
38.3
B_CELL_NAIVE_37
37.8
B_CELL_NAIVE_38
37.6
B_CELL_NAIVE_39
37.6
B_CELL_NAIVE_40
36.3
B_CELL_NAIVE_41
36.1
B_CELL_NAIVE_42
35.9
B_CELL_NAIVE_43
34.8
B_CELL_NAIVE_44
34.7
B_CELL_NAIVE_45
34.7
B_CELL_NAIVE_46
34.4
B_CELL_NAIVE_47
34.3
B_CELL_NAIVE_48
34.0
B_CELL_NAIVE_49
33.9
B_CELL_NAIVE_50
33.8
B_CELL_NAIVE_51
33.3
B_CELL_NAIVE_52
32.7
B_CELL_NAIVE_53
31.6
B_CELL_NAIVE_54
31.4
B_CELL_NAIVE_55
31.2
B_CELL_NAIVE_56
31.0
B_CELL_NAIVE_57
30.5
B_CELL_NAIVE_58
30.2
B_CELL_NAIVE_59
29.8
B_CELL_NAIVE_60
29.5
B_CELL_NAIVE_61
29.5
B_CELL_NAIVE_62
29.4
B_CELL_NAIVE_63
29.3
B_CELL_NAIVE_64
29.2
B_CELL_NAIVE_65
29.1
B_CELL_NAIVE_66
28.4
B_CELL_NAIVE_67
27.6
B_CELL_NAIVE_68
27.2
B_CELL_NAIVE_69
26.1
B_CELL_NAIVE_70
26.1
B_CELL_NAIVE_71
25.3
B_CELL_NAIVE_72
25.3
B_CELL_NAIVE_73
24.7
B_CELL_NAIVE_74
23.8
B_CELL_NAIVE_75
23.8
B_CELL_NAIVE_76
23.4
B_CELL_NAIVE_77
22.6
B_CELL_NAIVE_78
22.1
B_CELL_NAIVE_79
21.4
B_CELL_NAIVE_80
20.7
B_CELL_NAIVE_81
20.5
B_CELL_NAIVE_82
20.5
B_CELL_NAIVE_83
20.5
B_CELL_NAIVE_84
20.3
B_CELL_NAIVE_85
18.9
B_CELL_NAIVE_86
18.7
B_CELL_NAIVE_87
17.9
B_CELL_NAIVE_88
17.6
B_CELL_NAIVE_89
17.4
B_CELL_NAIVE_90
16.8
B_CELL_NAIVE_91
14.9
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