A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
460.2
nTPM
Monaco:
729.8
nTPM
Schmiedel:
181.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
460.2
HPA sample
nTPM
Classical monocyte nTPM: 273.5
Samples: 6
Max nTPM: 323.9
Min nTPM: 217.2
P10809_1003
323.9
P10809_1020
301.8
P10809_1039
246.3
P10809_1058
217.2
P10809_1080
251.2
P10809_1107
300.6
Intermediate monocyte nTPM: 396.2
Samples: 6
Max nTPM: 501.0
Min nTPM: 266.9
P10809_1004
382.4
P10809_1023
383.7
P10809_1042
501.0
P10809_1061
364.8
P10809_1081
266.9
P10809_1108
478.4
Non-classical monocyte nTPM: 460.2
Samples: 5
Max nTPM: 561.7
Min nTPM: 304.2
P10809_1005
499.9
P10809_1053
445.0
P10809_1072
490.4
P10809_1082
304.2
P10809_1109
561.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
729.8
Monaco sample
nTPM
Classical monocyte nTPM: 583.4
Samples: 4
Max nTPM: 634.6
Min nTPM: 560.4
RHH5313_R3680
634.6
RHH5221_R3593
561.9
RHH5250_R3622
576.6
RHH5279_R3651
560.4
Intermediate monocyte nTPM: 718.3
Samples: 4
Max nTPM: 833.6
Min nTPM: 516.7
RHH5314_R3681
833.6
RHH5222_R3594
516.7
RHH5251_R3623
712.9
RHH5280_R3652
810.1
Non-classical monocyte nTPM: 729.8
Samples: 4
Max nTPM: 870.9
Min nTPM: 509.2
RHH5315_R3682
870.9
RHH5223_R3595
509.2
RHH5252_R3624
702.3
RHH5281_R3653
836.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.1
Schmiedel sample id
TPM
Classical monocyte TPM: 120.9
Samples: 91
Max TPM: 224.5
Min TPM: 59.4
MONOCYTES_1
224.5
MONOCYTES_2
201.3
MONOCYTES_3
191.1
MONOCYTES_4
187.5
MONOCYTES_5
182.4
MONOCYTES_6
181.5
MONOCYTES_7
179.7
MONOCYTES_8
174.1
MONOCYTES_9
172.2
MONOCYTES_10
169.6
MONOCYTES_11
167.8
MONOCYTES_12
167.8
MONOCYTES_13
166.1
MONOCYTES_14
164.7
MONOCYTES_15
163.1
MONOCYTES_16
162.5
MONOCYTES_17
162.4
MONOCYTES_18
159.6
MONOCYTES_19
158.9
MONOCYTES_20
155.4
MONOCYTES_21
152.8
MONOCYTES_22
151.5
MONOCYTES_23
150.5
MONOCYTES_24
149.2
MONOCYTES_25
147.4
MONOCYTES_26
145.3
MONOCYTES_27
142.9
MONOCYTES_28
141.4
MONOCYTES_29
140.3
MONOCYTES_30
138.2
MONOCYTES_31
135.6
MONOCYTES_32
132.4
MONOCYTES_33
131.5
MONOCYTES_34
126.4
MONOCYTES_35
126.3
MONOCYTES_36
123.5
MONOCYTES_37
122.8
MONOCYTES_38
120.3
MONOCYTES_39
119.4
MONOCYTES_40
117.5
MONOCYTES_41
117.3
MONOCYTES_42
116.8
MONOCYTES_43
116.3
MONOCYTES_44
116.1
MONOCYTES_45
111.6
MONOCYTES_46
110.3
MONOCYTES_47
110.1
MONOCYTES_48
110.1
MONOCYTES_49
110.0
MONOCYTES_50
109.3
MONOCYTES_51
109.2
MONOCYTES_52
108.0
MONOCYTES_53
107.3
MONOCYTES_54
107.2
MONOCYTES_55
105.2
MONOCYTES_56
105.0
MONOCYTES_57
104.5
MONOCYTES_58
104.4
MONOCYTES_59
104.1
MONOCYTES_60
104.0
MONOCYTES_61
99.5
MONOCYTES_62
97.9
MONOCYTES_63
97.3
MONOCYTES_64
97.2
MONOCYTES_65
97.2
MONOCYTES_66
94.6
MONOCYTES_67
94.4
MONOCYTES_68
93.1
MONOCYTES_69
91.3
MONOCYTES_70
91.0
MONOCYTES_71
90.7
MONOCYTES_72
89.8
MONOCYTES_73
89.6
MONOCYTES_74
89.2
MONOCYTES_75
87.8
MONOCYTES_76
86.7
MONOCYTES_77
86.1
MONOCYTES_78
84.9
MONOCYTES_79
84.1
MONOCYTES_80
81.7
MONOCYTES_81
80.0
MONOCYTES_82
79.9
MONOCYTES_83
79.5
MONOCYTES_84
75.2
MONOCYTES_85
73.8
MONOCYTES_86
71.6
MONOCYTES_87
70.7
MONOCYTES_88
66.7
MONOCYTES_89
63.8
MONOCYTES_90
63.5
MONOCYTES_91
59.4
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Non-classical monocyte TPM: 181.1
Samples: 90
Max TPM: 350.1
Min TPM: 59.9
M2_1
350.1
M2_2
327.6
M2_3
315.6
M2_4
302.9
M2_5
299.2
M2_6
295.9
M2_7
291.7
M2_8
273.9
M2_9
273.8
M2_10
268.9
M2_11
264.9
M2_12
261.6
M2_13
254.0
M2_14
251.2
M2_15
246.8
M2_16
243.2
M2_17
241.7
M2_18
238.3
M2_19
234.2
M2_20
230.8
M2_21
226.7
M2_22
220.5
M2_23
219.5
M2_24
213.2
M2_25
209.8
M2_26
208.9
M2_27
208.2
M2_28
207.4
M2_29
206.3
M2_30
202.8
M2_31
200.9
M2_32
197.8
M2_33
193.7
M2_34
190.6
M2_35
190.5
M2_36
186.5
M2_37
186.3
M2_38
184.5
M2_39
182.1
M2_40
180.5
M2_41
180.4
M2_42
176.1
M2_43
175.3
M2_44
173.8
M2_45
173.0
M2_46
171.0
M2_47
170.8
M2_48
170.5
M2_49
170.0
M2_50
169.2
M2_51
168.9
M2_52
166.1
M2_53
162.2
M2_54
156.9
M2_55
156.0
M2_56
155.2
M2_57
154.5
M2_58
153.7
M2_59
152.2
M2_60
150.9
M2_61
148.5
M2_62
143.5
M2_63
141.2
M2_64
139.0
M2_65
138.9
M2_66
138.2
M2_67
134.4
M2_68
130.2
M2_69
130.0
M2_70
128.9
M2_71
128.1
M2_72
127.3
M2_73
125.1
M2_74
119.4
M2_75
119.2
M2_76
117.0
M2_77
116.1
M2_78
113.6
M2_79
113.0
M2_80
109.0
M2_81
107.4
M2_82
107.3
M2_83
105.0
M2_84
104.6
M2_85
103.2
M2_86
97.4
M2_87
94.9
M2_88
83.3
M2_89
81.8
M2_90
59.9
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