MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.6 nTPM
HPA Brain:108.4 nTPM
GTEx:123.6 nTPM
FANTOM5:333.7 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:168.2 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.4
1870 Female, age 42, unknown 134.8
2828 Female, age 72, unknown 115.1
2019 Male, age 18, unknown 89.4
1830 Male, age 51, unknown 87.7
1833 Male, age 53, unknown 86.6
2411 Female, age 72, unknown 86.4
1827 Male, age 72, unknown 79.2
2586 Male, age 75, left hemisphere 61.6
2219 Male, age 76, both hemispheres 59.0
2666 Male, age 74, left hemisphere 54.6
Dorsal raphe nucleus
nTPM: 99.8
2750 Male, age 76, both hemispheres 114.3
2016 Female, age 72, unknown 107.5
2298 Female, age 72, unknown 106.5
1828 Male, age 53, unknown 93.3
2047 Male, age 72, unknown 77.5
Inferior colliculus
nTPM: 99.3
2097 Female, age 72, unknown 111.0
1848 Female, age 42, unknown 109.7
2849 Male, age 72, unknown 93.8
1890 Male, age 53, unknown 82.8
Median raphe nucleus
nTPM: 80.5
2220 Male, age 76, midline 80.5
Periaquaductal grey, anterior
nTPM: 87.5
2502 Female, age 75, unknown 114.9
1795 Male, age 51, unknown 77.4
1947 Male, age 18, unknown 70.2
Periaquaductal grey, dorsal
nTPM: 99.4
1840 Male, age 53, unknown 110.7
2464 Female, age 72, unknown 97.8
2850 Male, age 76, both hemispheres 97.7
1831 Male, age 72, unknown 91.3
Periaquaductal grey, lateral
nTPM: 85.2
2053 Male, age 18, unknown 104.3
2140 Male, age 76, both hemispheres 93.3
2272 Male, age 74, both hemispheres 58.0
Pretectal area
nTPM: 88.8
2316 Male, age 76, right hemisphere 110.3
2667 Female, age 75, unknown 105.4
2273 Male, age 74, both hemispheres 103.0
2224 Female, age 72, unknown 100.2
1815 Male, age 53, unknown 91.8
1944 Female, age 72, unknown 89.7
1817 Female, age 42, unknown 87.8
2825 Male, age 18, unknown 79.5
2407 Male, age 75, both hemispheres 75.5
1816 Male, age 51, unknown 70.5
2007 Male, age 72, unknown 62.7
Red nucleus
nTPM: 108.4
1954 Female, age 42, unknown 135.0
1865 Male, age 51, unknown 134.9
1821 Female, age 72, unknown 132.4
1904 Male, age 53, unknown 124.6
2227 Male, age 72, unknown 121.2
2503 Female, age 72, unknown 118.6
2769 Male, age 72, unknown 116.6
2823 Male, age 76, right hemisphere 115.6
2785 Male, age 18, unknown 99.6
2725 Female, age 75, unknown 87.3
2588 Male, age 74, left hemisphere 72.1
2584 Male, age 75, left hemisphere 43.1
Substantia nigra
nTPM: 76.8
2699 Male, age 18, unknown 104.4
1889 Female, age 72, unknown 87.8
2241 Male, age 72, unknown 86.6
1851 Male, age 51, unknown 83.9
2409 Female, age 72, unknown 80.5
1916 Female, age 42, unknown 78.7
1941 Male, age 53, unknown 75.1
2590 Female, age 75, unknown 64.7
2583 Male, age 75, right hemisphere 58.5
2665 Male, age 74, both hemispheres 47.7
Superior colliculus
nTPM: 100.4
1913 Female, age 42, unknown 163.0
1995 Male, age 72, unknown 136.3
2587 Male, age 74, left hemisphere 109.3
2664 Male, age 75, both hemispheres 92.1
1839 Male, age 51, unknown 90.4
1895 Male, age 76, right hemisphere 88.1
1796 Male, age 53, unknown 86.8
2087 Female, age 72, unknown 83.2
2668 Female, age 75, unknown 83.1
2261 Male, age 18, unknown 71.5
Ventral tegmental area
nTPM: 100.0
2223 Female, age 72, unknown 143.0
1915 Female, age 42, unknown 95.0
2021 Male, age 53, unknown 94.4
1942 Male, age 51, unknown 94.0
2410 Female, age 72, unknown 91.5
2218 Male, age 76, both hemispheres 82.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 123.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.6
Samples: 183

Max nTPM: 293.7
Min nTPM: 39.1
Std nTPM: 42.6
Median nTPM: 116.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 293.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 243.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 239.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 215.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 215.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 208.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 207.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 206.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 196.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 196.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 189.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 333.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 333.7
FF:10158-103A5 76 years, female 333.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.8
Sample A Female 42.6
Sample B Female 35.8
Sample C Male 33.8
Sample D Male 46.6
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 76.8
Min nTPM: 26.7
Sample A Female 76.8
Sample B Female 43.5
Sample C Male 26.7
Sample D Male 29.5
Periaqueductal gray
nTPM: 34.5
Samples: 3

Max nTPM: 39.0
Min nTPM: 31.4
Sample B Female 39.0
Sample C Male 31.4
Sample D Male 33.1
Superior colliculi
nTPM: 38.2
Samples: 4

Max nTPM: 46.1
Min nTPM: 34.9
Sample A Female 46.1
Sample B Female 36.0
Sample C Male 34.9
Sample D Male 35.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 168.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.3
Samples: 4

Max nTPM: 180.6
Min nTPM: 160.7
Sample A Male 180.6
Sample B Male 170.4
Sample C Female 160.7
Sample D Female 161.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
1205 Antisense, RP_040324_01_D01, Mouse strain C57BL/6J (56 days, male) 7.6
1206 Antisense, RP_040324_01_D01, Mouse strain C57BL/6J (56 days, male) 3.6

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