MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.9 nTPM
HPA Brain:422.3 nTPM
GTEx:90.9 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:202.6 nTPM
Mouse:563.9 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 422.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.2
2666 Male, age 74, left hemisphere 161.7
1827 Male, age 72, unknown 111.9
2411 Female, age 72, unknown 98.6
1870 Female, age 42, unknown 82.2
2828 Female, age 72, unknown 76.9
2219 Male, age 76, both hemispheres 73.4
1833 Male, age 53, unknown 67.9
1830 Male, age 51, unknown 64.5
2586 Male, age 75, left hemisphere 60.2
2019 Male, age 18, unknown 44.7
Dorsal raphe nucleus
nTPM: 200.5
2298 Female, age 72, unknown 371.3
2750 Male, age 76, both hemispheres 232.1
2047 Male, age 72, unknown 212.1
1828 Male, age 53, unknown 100.6
2016 Female, age 72, unknown 86.3
Inferior colliculus
nTPM: 105.1
2097 Female, age 72, unknown 209.0
1848 Female, age 42, unknown 72.8
2849 Male, age 72, unknown 72.6
1890 Male, age 53, unknown 66.2
Median raphe nucleus
nTPM: 422.3
2220 Male, age 76, midline 422.3
Periaquaductal grey, anterior
nTPM: 111.9
1795 Male, age 51, unknown 148.4
1947 Male, age 18, unknown 103.9
2502 Female, age 75, unknown 83.4
Periaquaductal grey, dorsal
nTPM: 94.2
2850 Male, age 76, both hemispheres 125.6
1840 Male, age 53, unknown 100.6
2464 Female, age 72, unknown 79.2
1831 Male, age 72, unknown 71.5
Periaquaductal grey, lateral
nTPM: 89.9
2053 Male, age 18, unknown 101.3
2272 Male, age 74, both hemispheres 100.3
2140 Male, age 76, both hemispheres 68.0
Pretectal area
nTPM: 107.4
2224 Female, age 72, unknown 212.3
2825 Male, age 18, unknown 171.0
1816 Male, age 51, unknown 151.5
1944 Female, age 72, unknown 126.3
1815 Male, age 53, unknown 112.6
1817 Female, age 42, unknown 94.6
2667 Female, age 75, unknown 86.6
2007 Male, age 72, unknown 82.3
2273 Male, age 74, both hemispheres 51.6
2316 Male, age 76, right hemisphere 50.0
2407 Male, age 75, both hemispheres 42.5
Red nucleus
nTPM: 48.6
2584 Male, age 75, left hemisphere 100.2
1954 Female, age 42, unknown 73.3
1821 Female, age 72, unknown 62.5
2503 Female, age 72, unknown 45.8
1904 Male, age 53, unknown 45.1
2725 Female, age 75, unknown 43.7
2769 Male, age 72, unknown 41.5
2785 Male, age 18, unknown 40.7
2227 Male, age 72, unknown 40.5
2823 Male, age 76, right hemisphere 35.6
1865 Male, age 51, unknown 31.7
2588 Male, age 74, left hemisphere 22.3
Substantia nigra
nTPM: 88.8
1916 Female, age 42, unknown 141.4
2241 Male, age 72, unknown 133.2
2409 Female, age 72, unknown 128.7
1889 Female, age 72, unknown 120.4
1851 Male, age 51, unknown 76.0
1941 Male, age 53, unknown 68.4
2665 Male, age 74, both hemispheres 57.5
2699 Male, age 18, unknown 55.3
2590 Female, age 75, unknown 53.6
2583 Male, age 75, right hemisphere 53.4
Superior colliculus
nTPM: 80.3
2668 Female, age 75, unknown 163.7
2261 Male, age 18, unknown 106.8
1796 Male, age 53, unknown 101.8
2087 Female, age 72, unknown 101.6
1839 Male, age 51, unknown 81.0
1913 Female, age 42, unknown 59.5
1995 Male, age 72, unknown 59.3
1895 Male, age 76, right hemisphere 57.4
2587 Male, age 74, left hemisphere 36.9
2664 Male, age 75, both hemispheres 34.5
Ventral tegmental area
nTPM: 117.5
2021 Male, age 53, unknown 207.9
2410 Female, age 72, unknown 114.1
1915 Female, age 42, unknown 111.1
2218 Male, age 76, both hemispheres 93.4
2223 Female, age 72, unknown 92.1
1942 Male, age 51, unknown 86.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.9
Samples: 183

Max nTPM: 543.7
Min nTPM: 2.1
Std nTPM: 101.7
Median nTPM: 50.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 543.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 494.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 455.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 393.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 370.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 359.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 334.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 309.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 298.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 286.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 279.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 202.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 175.3
Samples: 4

Max nTPM: 303.4
Min nTPM: 14.7
Sample A Female 303.4
Sample B Female 130.4
Sample C Male 252.6
Sample D Male 14.7
Midbrain
nTPM: 192.8
Samples: 4

Max nTPM: 489.4
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 216.8
Sample C Male 46.2
Sample D Male 489.4
Periaqueductal gray
nTPM: 202.7
Samples: 3

Max nTPM: 289.8
Min nTPM: 150.5
Sample B Female 150.5
Sample C Male 289.8
Sample D Male 167.7
Superior colliculi
nTPM: 171.8
Samples: 4

Max nTPM: 300.9
Min nTPM: 41.0
Sample A Female 300.9
Sample B Female 195.9
Sample C Male 41.0
Sample D Male 149.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 563.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 563.9
Samples: 4

Max nTPM: 599.9
Min nTPM: 516.2
Sample A Male 516.2
Sample B Male 599.9
Sample C Female 574.3
Sample D Female 565.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
935 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 7.5
934 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 7.3

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