MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA Brain:36.0 nTPM
GTEx:37.6 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:9.7 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
2586 Male, age 75, left hemisphere 39.0
2219 Male, age 76, both hemispheres 31.6
2666 Male, age 74, left hemisphere 29.6
1827 Male, age 72, unknown 28.8
2411 Female, age 72, unknown 27.9
2828 Female, age 72, unknown 26.3
1870 Female, age 42, unknown 24.7
1833 Male, age 53, unknown 23.9
2019 Male, age 18, unknown 22.4
1830 Male, age 51, unknown 21.9
Dorsal raphe nucleus
nTPM: 29.6
2298 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 28.6
1828 Male, age 53, unknown 26.3
2016 Female, age 72, unknown 25.6
Inferior colliculus
nTPM: 26.0
2097 Female, age 72, unknown 28.2
1848 Female, age 42, unknown 26.1
1890 Male, age 53, unknown 25.4
2849 Male, age 72, unknown 24.4
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 36.0
1795 Male, age 51, unknown 37.5
1947 Male, age 18, unknown 35.8
2502 Female, age 75, unknown 34.8
Periaquaductal grey, dorsal
nTPM: 23.2
2464 Female, age 72, unknown 26.6
1840 Male, age 53, unknown 26.4
1831 Male, age 72, unknown 20.4
2850 Male, age 76, both hemispheres 19.4
Periaquaductal grey, lateral
nTPM: 23.8
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 23.8
2140 Male, age 76, both hemispheres 21.8
Pretectal area
nTPM: 26.2
2007 Male, age 72, unknown 32.4
1816 Male, age 51, unknown 27.7
2825 Male, age 18, unknown 27.7
2407 Male, age 75, both hemispheres 27.6
1817 Female, age 42, unknown 26.1
1944 Female, age 72, unknown 25.5
2224 Female, age 72, unknown 25.5
2273 Male, age 74, both hemispheres 24.8
1815 Male, age 53, unknown 24.6
2316 Male, age 76, right hemisphere 23.9
2667 Female, age 75, unknown 21.9
Red nucleus
nTPM: 25.0
2584 Male, age 75, left hemisphere 29.0
2785 Male, age 18, unknown 28.1
2588 Male, age 74, left hemisphere 27.4
2227 Male, age 72, unknown 26.6
2769 Male, age 72, unknown 26.3
1954 Female, age 42, unknown 25.5
2503 Female, age 72, unknown 24.7
1904 Male, age 53, unknown 24.5
1865 Male, age 51, unknown 23.5
1821 Female, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 20.6
2725 Female, age 75, unknown 20.5
Substantia nigra
nTPM: 29.0
1916 Female, age 42, unknown 34.7
1851 Male, age 51, unknown 33.5
1941 Male, age 53, unknown 31.2
2590 Female, age 75, unknown 30.7
2409 Female, age 72, unknown 29.6
2665 Male, age 74, both hemispheres 27.7
2583 Male, age 75, right hemisphere 27.5
2241 Male, age 72, unknown 25.5
2699 Male, age 18, unknown 25.2
1889 Female, age 72, unknown 24.3
Superior colliculus
nTPM: 26.8
2668 Female, age 75, unknown 36.9
1796 Male, age 53, unknown 31.2
2664 Male, age 75, both hemispheres 30.9
2261 Male, age 18, unknown 30.5
2087 Female, age 72, unknown 25.8
1839 Male, age 51, unknown 24.8
1995 Male, age 72, unknown 22.3
1895 Male, age 76, right hemisphere 22.2
2587 Male, age 74, left hemisphere 22.1
1913 Female, age 42, unknown 21.5
Ventral tegmental area
nTPM: 28.3
1915 Female, age 42, unknown 31.9
1942 Male, age 51, unknown 30.5
2410 Female, age 72, unknown 28.9
2021 Male, age 53, unknown 27.0
2223 Female, age 72, unknown 26.6
2218 Male, age 76, both hemispheres 24.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 183

Max nTPM: 68.4
Min nTPM: 17.5
Std nTPM: 10.1
Median nTPM: 36.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 68.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 66.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 65.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 63.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 62.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 61.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 58.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 57.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.0
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 56.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 26.7
Min nTPM: 17.9
Sample A Female 20.7
Sample B Female 17.9
Sample C Male 20.7
Sample D Male 26.7
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 18.5
Sample A Female 34.0
Sample B Female 22.0
Sample C Male 19.6
Sample D Male 18.5
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 19.7
Min nTPM: 16.5
Sample B Female 19.7
Sample C Male 18.2
Sample D Male 16.5
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.1
Sample A Female 20.1
Sample B Female 15.1
Sample C Male 20.1
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.2
Sample A Male 11.1
Sample B Male 8.2
Sample C Female 9.1
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68638023 Antisense, RP_050126_02_A12, Mouse strain C57BL/6J (56 days, male) 0.2

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