MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.4 nTPM
HPA Brain:90.1 nTPM
GTEx:93.4 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:0.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 90.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.5
2019 Male, age 18, unknown 110.7
2219 Male, age 76, both hemispheres 80.1
2411 Female, age 72, unknown 73.8
1827 Male, age 72, unknown 69.2
1870 Female, age 42, unknown 64.3
2586 Male, age 75, left hemisphere 63.0
1833 Male, age 53, unknown 58.1
2666 Male, age 74, left hemisphere 56.1
2828 Female, age 72, unknown 56.0
1830 Male, age 51, unknown 53.4
Dorsal raphe nucleus
nTPM: 64.3
1828 Male, age 53, unknown 74.9
2298 Female, age 72, unknown 74.1
2750 Male, age 76, both hemispheres 61.7
2016 Female, age 72, unknown 55.3
2047 Male, age 72, unknown 55.3
Inferior colliculus
nTPM: 80.2
2097 Female, age 72, unknown 92.0
1890 Male, age 53, unknown 89.8
1848 Female, age 42, unknown 77.8
2849 Male, age 72, unknown 61.2
Median raphe nucleus
nTPM: 81.4
2220 Male, age 76, midline 81.4
Periaquaductal grey, anterior
nTPM: 68.5
2502 Female, age 75, unknown 72.6
1947 Male, age 18, unknown 69.2
1795 Male, age 51, unknown 63.8
Periaquaductal grey, dorsal
nTPM: 61.6
1831 Male, age 72, unknown 64.2
2850 Male, age 76, both hemispheres 62.1
2464 Female, age 72, unknown 61.6
1840 Male, age 53, unknown 58.5
Periaquaductal grey, lateral
nTPM: 58.9
2272 Male, age 74, both hemispheres 70.0
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 52.5
Pretectal area
nTPM: 90.1
1817 Female, age 42, unknown 128.0
1816 Male, age 51, unknown 125.9
1944 Female, age 72, unknown 124.3
2007 Male, age 72, unknown 118.4
1815 Male, age 53, unknown 95.5
2667 Female, age 75, unknown 92.6
2224 Female, age 72, unknown 74.1
2273 Male, age 74, both hemispheres 73.0
2407 Male, age 75, both hemispheres 58.6
2316 Male, age 76, right hemisphere 50.8
2825 Male, age 18, unknown 49.9
Red nucleus
nTPM: 72.0
2785 Male, age 18, unknown 97.5
1821 Female, age 72, unknown 87.9
2725 Female, age 75, unknown 81.7
1865 Male, age 51, unknown 78.9
2503 Female, age 72, unknown 71.5
1904 Male, age 53, unknown 71.1
1954 Female, age 42, unknown 69.2
2227 Male, age 72, unknown 67.2
2769 Male, age 72, unknown 66.8
2823 Male, age 76, right hemisphere 58.3
2584 Male, age 75, left hemisphere 58.1
2588 Male, age 74, left hemisphere 55.4
Substantia nigra
nTPM: 81.3
1889 Female, age 72, unknown 109.1
2241 Male, age 72, unknown 106.7
1916 Female, age 42, unknown 94.6
2409 Female, age 72, unknown 88.3
1851 Male, age 51, unknown 81.9
1941 Male, age 53, unknown 78.5
2665 Male, age 74, both hemispheres 75.1
2583 Male, age 75, right hemisphere 63.3
2699 Male, age 18, unknown 60.4
2590 Female, age 75, unknown 55.0
Superior colliculus
nTPM: 70.1
2087 Female, age 72, unknown 97.4
2668 Female, age 75, unknown 75.0
2587 Male, age 74, left hemisphere 74.9
2261 Male, age 18, unknown 74.6
1895 Male, age 76, right hemisphere 74.2
1796 Male, age 53, unknown 73.5
1913 Female, age 42, unknown 67.0
1839 Male, age 51, unknown 58.3
1995 Male, age 72, unknown 57.0
2664 Male, age 75, both hemispheres 49.6
Ventral tegmental area
nTPM: 68.5
2410 Female, age 72, unknown 82.5
1915 Female, age 42, unknown 78.7
2218 Male, age 76, both hemispheres 69.4
2223 Female, age 72, unknown 64.9
1942 Male, age 51, unknown 63.4
2021 Male, age 53, unknown 52.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.4
Samples: 183

Max nTPM: 286.3
Min nTPM: 44.0
Std nTPM: 34.0
Median nTPM: 86.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 286.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 209.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 187.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 186.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 176.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 172.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 170.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 166.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 166.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 151.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 149.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.0
FF:10158-103A5 76 years, female 112.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.7
Sample C Male 0.2
Sample D Male 0.2
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.5
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.6
Superior colliculi
nTPM: 0.1
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.4

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