MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.4 nTPM
HPA Brain:42.3 nTPM
GTEx:47.4 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:112.1 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
1870 Female, age 42, unknown 44.5
2411 Female, age 72, unknown 41.9
1833 Male, age 53, unknown 39.1
2019 Male, age 18, unknown 38.2
1827 Male, age 72, unknown 38.0
2586 Male, age 75, left hemisphere 37.3
1830 Male, age 51, unknown 36.4
2666 Male, age 74, left hemisphere 34.8
2219 Male, age 76, both hemispheres 33.9
2828 Female, age 72, unknown 32.1
Dorsal raphe nucleus
nTPM: 42.3
2298 Female, age 72, unknown 53.1
2750 Male, age 76, both hemispheres 42.0
2047 Male, age 72, unknown 40.5
1828 Male, age 53, unknown 39.3
2016 Female, age 72, unknown 36.7
Inferior colliculus
nTPM: 39.6
2097 Female, age 72, unknown 45.2
1848 Female, age 42, unknown 40.3
1890 Male, age 53, unknown 37.3
2849 Male, age 72, unknown 35.8
Median raphe nucleus
nTPM: 39.1
2220 Male, age 76, midline 39.1
Periaquaductal grey, anterior
nTPM: 33.8
1947 Male, age 18, unknown 38.1
2502 Female, age 75, unknown 33.1
1795 Male, age 51, unknown 30.3
Periaquaductal grey, dorsal
nTPM: 37.4
1840 Male, age 53, unknown 40.3
2850 Male, age 76, both hemispheres 38.1
1831 Male, age 72, unknown 35.7
2464 Female, age 72, unknown 35.6
Periaquaductal grey, lateral
nTPM: 34.0
2053 Male, age 18, unknown 36.7
2272 Male, age 74, both hemispheres 34.6
2140 Male, age 76, both hemispheres 30.8
Pretectal area
nTPM: 37.6
1815 Male, age 53, unknown 40.9
2224 Female, age 72, unknown 40.3
1817 Female, age 42, unknown 39.9
1816 Male, age 51, unknown 39.7
1944 Female, age 72, unknown 39.6
2007 Male, age 72, unknown 38.7
2667 Female, age 75, unknown 37.1
2316 Male, age 76, right hemisphere 36.0
2273 Male, age 74, both hemispheres 35.7
2825 Male, age 18, unknown 33.9
2407 Male, age 75, both hemispheres 32.3
Red nucleus
nTPM: 37.9
1821 Female, age 72, unknown 53.0
1865 Male, age 51, unknown 42.2
2503 Female, age 72, unknown 40.8
2823 Male, age 76, right hemisphere 39.9
2725 Female, age 75, unknown 39.3
1954 Female, age 42, unknown 38.8
1904 Male, age 53, unknown 37.8
2769 Male, age 72, unknown 37.6
2227 Male, age 72, unknown 35.4
2785 Male, age 18, unknown 32.9
2584 Male, age 75, left hemisphere 29.0
2588 Male, age 74, left hemisphere 28.2
Substantia nigra
nTPM: 40.5
2409 Female, age 72, unknown 56.7
2241 Male, age 72, unknown 49.0
1889 Female, age 72, unknown 42.3
2699 Male, age 18, unknown 39.7
1851 Male, age 51, unknown 39.5
1941 Male, age 53, unknown 39.0
1916 Female, age 42, unknown 37.7
2590 Female, age 75, unknown 35.8
2583 Male, age 75, right hemisphere 34.1
2665 Male, age 74, both hemispheres 31.5
Superior colliculus
nTPM: 36.9
1895 Male, age 76, right hemisphere 42.2
2668 Female, age 75, unknown 40.2
1913 Female, age 42, unknown 39.3
2261 Male, age 18, unknown 37.4
1995 Male, age 72, unknown 36.2
1796 Male, age 53, unknown 35.9
1839 Male, age 51, unknown 35.9
2587 Male, age 74, left hemisphere 35.6
2087 Female, age 72, unknown 35.3
2664 Male, age 75, both hemispheres 30.9
Ventral tegmental area
nTPM: 38.7
2410 Female, age 72, unknown 43.9
1942 Male, age 51, unknown 38.4
2223 Female, age 72, unknown 38.1
2218 Male, age 76, both hemispheres 38.0
2021 Male, age 53, unknown 37.2
1915 Female, age 42, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 183

Max nTPM: 71.5
Min nTPM: 32.2
Std nTPM: 7.6
Median nTPM: 46.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 67.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 64.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 63.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 63.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 63.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 62.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 61.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 61.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 45.6
Min nTPM: 31.2
Sample A Female 45.6
Sample B Female 31.2
Sample C Male 35.9
Sample D Male 32.2
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 45.4
Min nTPM: 37.9
Sample A Female 45.4
Sample B Female 37.9
Sample C Male 39.2
Sample D Male 41.8
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 34.2
Min nTPM: 30.9
Sample B Female 30.9
Sample C Male 34.2
Sample D Male 32.2
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 46.2
Min nTPM: 35.6
Sample A Female 46.2
Sample B Female 35.6
Sample C Male 40.3
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 112.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 120.9
Min nTPM: 106.8
Sample A Male 106.8
Sample B Male 108.3
Sample C Female 120.9
Sample D Female 112.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70473939 Antisense, RP_050614_04_F01, Mouse strain C57BL/6J (56 days, male) 1.4

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