MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.1 nTPM
HPA Brain:149.4 nTPM
GTEx:54.1 nTPM
FANTOM5:68.3 Scaled Tags Per Million
Pig:89.0 nTPM
Mouse:79.3 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.6
2586 Male, age 75, left hemisphere 253.7
1833 Male, age 53, unknown 155.8
2828 Female, age 72, unknown 146.3
1870 Female, age 42, unknown 143.2
1827 Male, age 72, unknown 136.9
2411 Female, age 72, unknown 133.9
1830 Male, age 51, unknown 133.5
2666 Male, age 74, left hemisphere 131.0
2219 Male, age 76, both hemispheres 113.2
2019 Male, age 18, unknown 87.9
Dorsal raphe nucleus
nTPM: 149.4
1828 Male, age 53, unknown 173.9
2016 Female, age 72, unknown 167.0
2047 Male, age 72, unknown 164.1
2298 Female, age 72, unknown 131.5
2750 Male, age 76, both hemispheres 110.7
Inferior colliculus
nTPM: 146.0
2849 Male, age 72, unknown 165.1
1848 Female, age 42, unknown 159.4
1890 Male, age 53, unknown 137.0
2097 Female, age 72, unknown 122.3
Median raphe nucleus
nTPM: 105.2
2220 Male, age 76, midline 105.2
Periaquaductal grey, anterior
nTPM: 138.4
2502 Female, age 75, unknown 166.7
1795 Male, age 51, unknown 125.3
1947 Male, age 18, unknown 123.1
Periaquaductal grey, dorsal
nTPM: 140.9
1840 Male, age 53, unknown 184.5
2464 Female, age 72, unknown 143.2
2850 Male, age 76, both hemispheres 123.6
1831 Male, age 72, unknown 112.3
Periaquaductal grey, lateral
nTPM: 136.1
2053 Male, age 18, unknown 163.5
2140 Male, age 76, both hemispheres 133.1
2272 Male, age 74, both hemispheres 111.7
Pretectal area
nTPM: 126.0
2407 Male, age 75, both hemispheres 171.0
2825 Male, age 18, unknown 170.7
2667 Female, age 75, unknown 142.2
2273 Male, age 74, both hemispheres 129.6
2224 Female, age 72, unknown 125.4
1816 Male, age 51, unknown 120.6
1815 Male, age 53, unknown 110.6
1944 Female, age 72, unknown 109.2
1817 Female, age 42, unknown 106.0
2316 Male, age 76, right hemisphere 105.0
2007 Male, age 72, unknown 95.6
Red nucleus
nTPM: 137.9
2584 Male, age 75, left hemisphere 161.4
2769 Male, age 72, unknown 159.6
2588 Male, age 74, left hemisphere 154.4
2227 Male, age 72, unknown 154.0
1821 Female, age 72, unknown 150.8
1954 Female, age 42, unknown 146.0
2503 Female, age 72, unknown 138.1
1904 Male, age 53, unknown 134.4
1865 Male, age 51, unknown 132.7
2725 Female, age 75, unknown 114.1
2823 Male, age 76, right hemisphere 112.2
2785 Male, age 18, unknown 96.4
Substantia nigra
nTPM: 149.0
2699 Male, age 18, unknown 209.8
2583 Male, age 75, right hemisphere 175.0
1916 Female, age 42, unknown 168.5
2665 Male, age 74, both hemispheres 159.4
2241 Male, age 72, unknown 156.7
1851 Male, age 51, unknown 148.0
2590 Female, age 75, unknown 137.5
2409 Female, age 72, unknown 121.7
1889 Female, age 72, unknown 118.6
1941 Male, age 53, unknown 94.9
Superior colliculus
nTPM: 143.0
2664 Male, age 75, both hemispheres 254.9
1839 Male, age 51, unknown 161.7
1796 Male, age 53, unknown 151.1
2587 Male, age 74, left hemisphere 143.0
2261 Male, age 18, unknown 142.2
2668 Female, age 75, unknown 125.3
1995 Male, age 72, unknown 123.7
1895 Male, age 76, right hemisphere 111.6
1913 Female, age 42, unknown 109.8
2087 Female, age 72, unknown 106.6
Ventral tegmental area
nTPM: 135.2
2223 Female, age 72, unknown 161.9
2410 Female, age 72, unknown 149.8
1915 Female, age 42, unknown 139.9
1942 Male, age 51, unknown 134.8
2021 Male, age 53, unknown 127.5
2218 Male, age 76, both hemispheres 97.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.1
Samples: 183

Max nTPM: 114.4
Min nTPM: 13.9
Std nTPM: 14.3
Median nTPM: 52.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 114.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 109.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 93.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 85.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 84.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 82.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 82.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 81.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 78.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 76.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 74.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.3
FF:10158-103A5 76 years, female 68.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 4

Max nTPM: 102.0
Min nTPM: 76.3
Sample A Female 96.2
Sample B Female 81.6
Sample C Male 102.0
Sample D Male 76.3
Midbrain
nTPM: 87.4
Samples: 4

Max nTPM: 120.2
Min nTPM: 63.8
Sample A Female 63.8
Sample B Female 87.9
Sample C Male 120.2
Sample D Male 77.5
Periaqueductal gray
nTPM: 79.3
Samples: 3

Max nTPM: 91.1
Min nTPM: 62.3
Sample B Female 91.1
Sample C Male 84.6
Sample D Male 62.3
Superior colliculi
nTPM: 82.4
Samples: 4

Max nTPM: 89.8
Min nTPM: 73.9
Sample A Female 80.7
Sample B Female 73.9
Sample C Male 85.3
Sample D Male 89.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 80.4
Min nTPM: 77.7
Sample A Male 80.1
Sample B Male 80.4
Sample C Female 79.0
Sample D Female 77.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
71358590 Antisense, RP_050725_03_E11, Mouse strain C57BL/6J (56 days, male) 5.0
68843841 Antisense, RP_050217_02_D03, Mouse strain C57BL/6J (56 days, male) 3.4

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