On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
715.2
nTPM
HPA Brain:
541.1
nTPM
GTEx:
715.2
nTPM
FANTOM5:
902.4
Scaled Tags Per Million
Mouse:
682.9
nTPM
Rat:
0.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
541.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 481.0
2019
Male, age 18, unknown
548.2
2666
Male, age 74, left hemisphere
539.3
1827
Male, age 72, unknown
531.8
2411
Female, age 72, unknown
517.2
1870
Female, age 42, unknown
511.5
2828
Female, age 72, unknown
511.4
2219
Male, age 76, both hemispheres
433.9
1833
Male, age 53, unknown
422.1
1830
Male, age 51, unknown
417.8
2586
Male, age 75, left hemisphere
376.4
Dorsal raphe nucleus nTPM: 456.4
2298
Female, age 72, unknown
516.0
2750
Male, age 76, both hemispheres
508.7
2047
Male, age 72, unknown
449.3
1828
Male, age 53, unknown
428.9
2016
Female, age 72, unknown
378.9
Inferior colliculus nTPM: 424.0
2097
Female, age 72, unknown
441.0
1848
Female, age 42, unknown
440.6
1890
Male, age 53, unknown
413.2
2849
Male, age 72, unknown
401.3
Median raphe nucleus nTPM: 506.4
2220
Male, age 76, midline
506.4
Periaquaductal grey, anterior nTPM: 497.3
1795
Male, age 51, unknown
525.7
1947
Male, age 18, unknown
512.3
2502
Female, age 75, unknown
454.1
Periaquaductal grey, dorsal nTPM: 406.3
2850
Male, age 76, both hemispheres
430.1
1831
Male, age 72, unknown
424.5
1840
Male, age 53, unknown
412.7
2464
Female, age 72, unknown
357.7
Periaquaductal grey, lateral nTPM: 434.7
2272
Male, age 74, both hemispheres
465.1
2140
Male, age 76, both hemispheres
422.0
2053
Male, age 18, unknown
417.0
Pretectal area nTPM: 541.1
1817
Female, age 42, unknown
678.4
1944
Female, age 72, unknown
643.9
2007
Male, age 72, unknown
639.3
1816
Male, age 51, unknown
616.9
1815
Male, age 53, unknown
578.9
2667
Female, age 75, unknown
536.4
2407
Male, age 75, both hemispheres
529.5
2273
Male, age 74, both hemispheres
458.6
2224
Female, age 72, unknown
438.7
2316
Male, age 76, right hemisphere
421.2
2825
Male, age 18, unknown
410.8
Red nucleus nTPM: 497.4
2725
Female, age 75, unknown
580.9
2785
Male, age 18, unknown
564.9
1865
Male, age 51, unknown
536.3
1821
Female, age 72, unknown
502.1
1904
Male, age 53, unknown
493.6
2503
Female, age 72, unknown
489.2
2227
Male, age 72, unknown
484.7
2769
Male, age 72, unknown
483.6
1954
Female, age 42, unknown
482.8
2584
Male, age 75, left hemisphere
463.0
2823
Male, age 76, right hemisphere
450.3
2588
Male, age 74, left hemisphere
437.7
Substantia nigra nTPM: 505.7
1889
Female, age 72, unknown
606.3
1916
Female, age 42, unknown
602.5
1941
Male, age 53, unknown
600.7
1851
Male, age 51, unknown
540.7
2665
Male, age 74, both hemispheres
494.1
2583
Male, age 75, right hemisphere
465.3
2699
Male, age 18, unknown
453.7
2590
Female, age 75, unknown
445.1
2241
Male, age 72, unknown
427.7
2409
Female, age 72, unknown
421.3
Superior colliculus nTPM: 489.4
2087
Female, age 72, unknown
582.5
2261
Male, age 18, unknown
536.9
1796
Male, age 53, unknown
529.8
2668
Female, age 75, unknown
507.4
1913
Female, age 42, unknown
506.5
2587
Male, age 74, left hemisphere
495.1
1895
Male, age 76, right hemisphere
462.6
1995
Male, age 72, unknown
454.4
1839
Male, age 51, unknown
428.5
2664
Male, age 75, both hemispheres
390.7
Ventral tegmental area nTPM: 502.9
2218
Male, age 76, both hemispheres
555.6
2410
Female, age 72, unknown
543.9
1915
Female, age 42, unknown
520.0
2223
Female, age 72, unknown
518.1
1942
Male, age 51, unknown
453.4
2021
Male, age 53, unknown
426.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
715.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 715.2
Samples: 183
Max nTPM: 1227.7
Min nTPM: 449.3
Std nTPM: 136.8
Median nTPM: 707.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1227.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1135.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1097.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1056.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1033.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
993.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
984.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
974.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
968.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
964.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
959.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
955.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
945.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
926.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
925.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
920.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
917.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
879.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
874.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
873.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
861.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
859.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
857.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
856.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
854.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
848.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
848.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
842.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
840.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
837.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
836.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
832.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
832.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
829.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
828.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
827.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
824.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
824.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
823.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
816.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
810.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
802.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
801.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
799.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
798.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
798.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
796.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
796.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
790.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
790.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
784.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
783.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
783.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
782.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
781.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
778.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
778.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
778.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
777.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
763.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
761.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
760.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
758.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
754.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
753.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
752.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
746.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
745.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
744.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
742.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
740.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
740.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
739.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
737.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
734.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
732.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
729.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
728.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
728.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
719.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
719.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
718.8
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
718.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
715.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
715.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
714.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
713.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
713.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
711.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
711.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
709.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
707.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
707.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
703.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
701.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
700.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
700.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
697.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
692.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
690.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
690.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
687.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
686.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
685.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
680.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
680.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
676.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
675.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
668.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
668.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
666.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
663.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
662.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
662.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
661.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
659.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
659.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
654.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
651.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
651.4
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
648.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
647.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
645.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
639.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
638.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
636.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
635.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
632.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
625.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
625.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
622.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
621.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
620.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
619.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
616.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
612.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
612.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
610.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
609.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
608.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
607.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
606.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
604.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
600.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
600.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
599.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
595.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
595.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
593.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
591.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
589.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
585.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
581.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
581.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
578.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
575.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
574.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
573.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
570.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
569.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
569.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
563.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
563.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
562.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
560.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
555.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
552.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
547.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
546.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
546.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
545.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
522.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
520.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
518.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
514.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
510.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
489.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
486.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
481.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
475.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
469.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
456.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
449.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
682.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 682.9
Samples: 4
Max nTPM: 690.3
Min nTPM: 677.1
Sample A
677.1
Sample B
690.3
Sample C
686.4
Sample D
677.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
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The Human Protein Atlas project is funded
