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  • PSME3IP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.9 nTPM
HPA Brain:113.6 nTPM
GTEx:74.9 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:40.2 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Amygdala
nTPM: 113.6
2695 Female, age 67, right hemisphere 125.8
2814 Male, age 76, right hemisphere 124.1
2514 Male, age 75, right hemisphere 114.5
1987 Female, age 91, left hemisphere 102.3
2517 Female, age 94, left hemisphere 101.1
Basal amygdala
nTPM: 108.5
2827 Female, age 67, right hemisphere 114.5
1955 Male, age 76, both hemispheres 113.4
2609 Male, age 75, right hemisphere 111.6
2685 Female, age 94, left hemisphere 104.9
2243 Female, age 91, right hemisphere 104.4
2110 Male, age 80, left hemisphere 102.4
Central amygdala
nTPM: 111.5
2826 Female, age 94, left hemisphere 129.7
2701 Female, age 91, right hemisphere 108.5
1905 Male, age 76, both hemispheres 107.3
2515 Male, age 75, right hemisphere 106.4
2239 Male, age 80, left hemisphere 105.7
Corticomedial amygdala
nTPM: 97.3
2428 Male, age 75, right hemisphere 105.2
2240 Male, age 76, both hemispheres 101.3
2535 Female, age 67, right hemisphere 97.1
2242 Female, age 91, right hemisphere 95.5
2829 Male, age 80, left hemisphere 93.6
2429 Female, age 94, left hemisphere 91.2
Lateral amygdala
nTPM: 113.6
2830 Female, age 67, right hemisphere 129.6
2516 Male, age 75, right hemisphere 128.8
2534 Female, age 94, left hemisphere 114.6
1883 Male, age 76, both hemispheres 109.6
2256 Male, age 80, left hemisphere 103.2
2255 Female, age 91, right hemisphere 95.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.9
Samples: 181

Max nTPM: 144.8
Min nTPM: 51.0
Std nTPM: 12.9
Median nTPM: 73.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 144.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 118.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 114.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 110.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 108.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 104.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 100.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 98.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 93.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 92.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 91.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 88.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 87.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 86.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 86.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 86.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 86.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 85.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 85.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 85.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 85.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 84.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 84.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 84.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 83.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 83.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 83.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 83.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 83.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 82.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 82.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 82.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 81.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 81.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 81.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 80.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 80.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 80.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 79.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 79.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 79.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 79.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 78.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 78.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 77.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 77.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 77.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 77.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 77.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 77.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 77.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 76.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 76.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 76.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 76.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 76.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 75.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 75.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 75.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 74.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 74.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 74.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 74.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 73.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 73.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 73.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 73.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 73.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 72.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 72.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 71.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 71.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 71.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 70.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 70.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 70.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 70.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 70.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 69.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 69.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 69.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 69.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 68.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 68.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 68.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 67.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 67.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 67.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 67.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 67.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 67.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 67.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 67.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 67.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 66.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 66.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 66.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 66.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 64.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 64.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 64.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 64.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 64.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 64.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 63.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 63.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 63.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 63.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 63.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 62.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 62.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 61.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 61.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 61.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 61.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 61.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 60.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 60.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 59.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 59.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 59.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 59.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 59.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 59.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 58.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 58.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 58.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 57.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.7
FF:10151-102I7 76 years, female 68.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.8
Pig sample Sample description nTPM
Amygdala
nTPM: 36.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 32.2
Sample A Female 45.6
Sample B Female 37.2
Sample C Male 32.2
Sample D Male 32.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 40.2
Samples: 4

Max nTPM: 41.8
Min nTPM: 37.3
Sample A Male 41.6
Sample B Male 39.9
Sample C Female 37.3
Sample D Female 41.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
583573 Antisense, RP_040831_02_G01, Mouse strain C57BL/6J (56 days, male) 4.1

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