MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:107.6 nTPM
GTEx:38.5 nTPM
FANTOM5:88.4 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:21.1 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 107.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.1
2586 Male, age 75, left hemisphere 127.3
2828 Female, age 72, unknown 98.1
1827 Male, age 72, unknown 86.1
2411 Female, age 72, unknown 80.4
1833 Male, age 53, unknown 79.7
1870 Female, age 42, unknown 79.3
1830 Male, age 51, unknown 75.2
2666 Male, age 74, left hemisphere 71.9
2019 Male, age 18, unknown 69.3
2219 Male, age 76, both hemispheres 63.7
Dorsal raphe nucleus
nTPM: 94.6
2016 Female, age 72, unknown 112.6
2298 Female, age 72, unknown 104.4
2047 Male, age 72, unknown 95.9
1828 Male, age 53, unknown 89.6
2750 Male, age 76, both hemispheres 70.5
Inferior colliculus
nTPM: 79.7
2849 Male, age 72, unknown 83.1
1848 Female, age 42, unknown 81.5
1890 Male, age 53, unknown 77.8
2097 Female, age 72, unknown 76.6
Median raphe nucleus
nTPM: 69.1
2220 Male, age 76, midline 69.1
Periaquaductal grey, anterior
nTPM: 99.3
1947 Male, age 18, unknown 101.7
1795 Male, age 51, unknown 101.3
2502 Female, age 75, unknown 95.0
Periaquaductal grey, dorsal
nTPM: 99.2
2850 Male, age 76, both hemispheres 111.2
1840 Male, age 53, unknown 106.6
1831 Male, age 72, unknown 92.5
2464 Female, age 72, unknown 86.7
Periaquaductal grey, lateral
nTPM: 107.6
2272 Male, age 74, both hemispheres 111.7
2140 Male, age 76, both hemispheres 106.6
2053 Male, age 18, unknown 104.5
Pretectal area
nTPM: 85.1
2273 Male, age 74, both hemispheres 117.9
2224 Female, age 72, unknown 98.1
2825 Male, age 18, unknown 96.0
2667 Female, age 75, unknown 95.5
2407 Male, age 75, both hemispheres 89.5
2316 Male, age 76, right hemisphere 80.2
1944 Female, age 72, unknown 76.5
1815 Male, age 53, unknown 75.1
1816 Male, age 51, unknown 73.8
1817 Female, age 42, unknown 67.3
2007 Male, age 72, unknown 65.5
Red nucleus
nTPM: 78.9
2769 Male, age 72, unknown 86.9
2584 Male, age 75, left hemisphere 85.6
2588 Male, age 74, left hemisphere 84.2
2227 Male, age 72, unknown 84.1
1954 Female, age 42, unknown 83.5
1865 Male, age 51, unknown 80.6
2725 Female, age 75, unknown 80.1
2503 Female, age 72, unknown 78.0
1904 Male, age 53, unknown 77.2
1821 Female, age 72, unknown 72.3
2823 Male, age 76, right hemisphere 71.2
2785 Male, age 18, unknown 63.1
Substantia nigra
nTPM: 85.9
2699 Male, age 18, unknown 103.1
1916 Female, age 42, unknown 94.7
1851 Male, age 51, unknown 92.7
2583 Male, age 75, right hemisphere 89.2
2409 Female, age 72, unknown 86.8
2665 Male, age 74, both hemispheres 82.2
1941 Male, age 53, unknown 81.4
2241 Male, age 72, unknown 79.8
2590 Female, age 75, unknown 78.3
1889 Female, age 72, unknown 70.3
Superior colliculus
nTPM: 86.5
2664 Male, age 75, both hemispheres 124.7
1995 Male, age 72, unknown 93.4
2261 Male, age 18, unknown 90.8
1796 Male, age 53, unknown 88.8
2668 Female, age 75, unknown 83.8
1839 Male, age 51, unknown 81.6
1913 Female, age 42, unknown 80.8
2087 Female, age 72, unknown 80.5
2587 Male, age 74, left hemisphere 75.2
1895 Male, age 76, right hemisphere 65.5
Ventral tegmental area
nTPM: 87.0
2021 Male, age 53, unknown 100.2
1942 Male, age 51, unknown 97.8
1915 Female, age 42, unknown 96.4
2410 Female, age 72, unknown 79.6
2223 Female, age 72, unknown 76.8
2218 Male, age 76, both hemispheres 71.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 183

Max nTPM: 106.8
Min nTPM: 12.9
Std nTPM: 14.4
Median nTPM: 35.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 106.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 93.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 80.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 78.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 77.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 72.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 70.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 70.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 70.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.4
FF:10158-103A5 76 years, female 88.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 23.0
Sample A Female 35.4
Sample B Female 23.0
Sample C Male 33.6
Sample D Male 32.4
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 53.0
Min nTPM: 23.5
Sample A Female 53.0
Sample B Female 24.8
Sample C Male 30.2
Sample D Male 23.5
Periaqueductal gray
nTPM: 31.9
Samples: 3

Max nTPM: 40.8
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 40.8
Sample D Male 30.9
Superior colliculi
nTPM: 29.6
Samples: 4

Max nTPM: 31.9
Min nTPM: 25.9
Sample A Female 31.9
Sample B Female 25.9
Sample C Male 29.3
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 19.0
Sample A Male 22.3
Sample B Male 19.0
Sample C Female 21.8
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68861698 Antisense, RP_050224_02_G07, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo