MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.0 nTPM
HPA Brain:56.6 nTPM
GTEx:73.0 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:49.0 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.6
2666 Male, age 74, left hemisphere 52.1
2828 Female, age 72, unknown 42.7
2019 Male, age 18, unknown 42.0
1830 Male, age 51, unknown 38.3
2411 Female, age 72, unknown 37.3
1833 Male, age 53, unknown 30.7
1870 Female, age 42, unknown 29.4
1827 Male, age 72, unknown 28.7
2219 Male, age 76, both hemispheres 17.6
2586 Male, age 75, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 49.4
2298 Female, age 72, unknown 79.3
2016 Female, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 41.6
1828 Male, age 53, unknown 38.6
2047 Male, age 72, unknown 30.8
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 47.2
1890 Male, age 53, unknown 34.8
1848 Female, age 42, unknown 30.4
2849 Male, age 72, unknown 27.3
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 30.6
1795 Male, age 51, unknown 43.3
2502 Female, age 75, unknown 24.5
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 48.9
1831 Male, age 72, unknown 68.3
1840 Male, age 53, unknown 43.9
2850 Male, age 76, both hemispheres 41.8
2464 Female, age 72, unknown 41.7
Periaquaductal grey, lateral
nTPM: 50.3
2272 Male, age 74, both hemispheres 64.7
2053 Male, age 18, unknown 43.7
2140 Male, age 76, both hemispheres 42.5
Pretectal area
nTPM: 40.5
2316 Male, age 76, right hemisphere 50.5
2273 Male, age 74, both hemispheres 49.7
2224 Female, age 72, unknown 49.0
2407 Male, age 75, both hemispheres 48.3
2007 Male, age 72, unknown 44.3
1817 Female, age 42, unknown 42.7
1944 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 36.1
2825 Male, age 18, unknown 31.7
2667 Female, age 75, unknown 28.4
1816 Male, age 51, unknown 24.2
Red nucleus
nTPM: 36.2
2503 Female, age 72, unknown 54.7
2725 Female, age 75, unknown 46.3
2769 Male, age 72, unknown 43.7
1865 Male, age 51, unknown 42.1
2227 Male, age 72, unknown 40.2
2785 Male, age 18, unknown 38.6
2823 Male, age 76, right hemisphere 38.3
1904 Male, age 53, unknown 36.2
1821 Female, age 72, unknown 32.0
1954 Female, age 42, unknown 23.9
2584 Male, age 75, left hemisphere 21.8
2588 Male, age 74, left hemisphere 17.1
Substantia nigra
nTPM: 56.6
2590 Female, age 75, unknown 98.4
2699 Male, age 18, unknown 79.2
2665 Male, age 74, both hemispheres 76.9
1916 Female, age 42, unknown 57.1
1851 Male, age 51, unknown 55.6
2409 Female, age 72, unknown 55.6
1941 Male, age 53, unknown 42.8
2583 Male, age 75, right hemisphere 37.8
2241 Male, age 72, unknown 34.2
1889 Female, age 72, unknown 28.6
Superior colliculus
nTPM: 42.7
1913 Female, age 42, unknown 73.1
1995 Male, age 72, unknown 55.9
2587 Male, age 74, left hemisphere 54.4
2087 Female, age 72, unknown 44.8
1796 Male, age 53, unknown 43.4
2664 Male, age 75, both hemispheres 35.2
1839 Male, age 51, unknown 34.9
2261 Male, age 18, unknown 31.5
1895 Male, age 76, right hemisphere 27.2
2668 Female, age 75, unknown 26.8
Ventral tegmental area
nTPM: 55.1
2021 Male, age 53, unknown 85.9
1915 Female, age 42, unknown 62.5
2410 Female, age 72, unknown 53.0
2218 Male, age 76, both hemispheres 50.4
1942 Male, age 51, unknown 44.7
2223 Female, age 72, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.0
Samples: 183

Max nTPM: 1031.0
Min nTPM: 3.6
Std nTPM: 96.4
Median nTPM: 47.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1031.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 538.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 281.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 274.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 271.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 257.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 219.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 218.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 213.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 180.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 179.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.7
Samples: 4

Max nTPM: 71.5
Min nTPM: 39.2
Sample A Female 52.3
Sample B Female 71.5
Sample C Male 63.9
Sample D Male 39.2
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 24.6
Sample A Female 40.5
Sample B Female 61.5
Sample C Male 25.6
Sample D Male 24.6
Periaqueductal gray
nTPM: 67.1
Samples: 3

Max nTPM: 92.4
Min nTPM: 50.8
Sample B Female 58.1
Sample C Male 92.4
Sample D Male 50.8
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 44.0
Min nTPM: 33.3
Sample A Female 44.0
Sample B Female 37.9
Sample C Male 34.8
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 55.5
Min nTPM: 41.9
Sample A Male 55.5
Sample B Male 41.9
Sample C Female 44.8
Sample D Female 53.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
77371775 Antisense, RP_070116_01_D12, Mouse strain C57BL/6J (56 days, male) 1.4
77923147 Antisense, RP_070219_01_C12, Mouse strain C57BL/6J (56 days, male) 1.4
68191456 Antisense, RP_041129_01_C02, Mouse strain C57BL/6J (56 days, male) 0.8

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