MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:354.9 nTPM
HPA Brain:99.6 nTPM
GTEx:354.9 nTPM
FANTOM5:194.9 Scaled Tags Per Million
Mouse:1007.7 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.3
2019 Male, age 18, unknown 101.4
1827 Male, age 72, unknown 101.1
1870 Female, age 42, unknown 83.3
2666 Male, age 74, left hemisphere 83.3
2219 Male, age 76, both hemispheres 77.1
1833 Male, age 53, unknown 75.6
2411 Female, age 72, unknown 73.8
2586 Male, age 75, left hemisphere 72.4
1830 Male, age 51, unknown 63.2
2828 Female, age 72, unknown 61.8
Dorsal raphe nucleus
nTPM: 83.8
1828 Male, age 53, unknown 102.2
2298 Female, age 72, unknown 97.9
2047 Male, age 72, unknown 79.2
2750 Male, age 76, both hemispheres 70.1
2016 Female, age 72, unknown 69.4
Inferior colliculus
nTPM: 95.4
2097 Female, age 72, unknown 114.3
1890 Male, age 53, unknown 104.9
1848 Female, age 42, unknown 91.1
2849 Male, age 72, unknown 71.3
Median raphe nucleus
nTPM: 80.8
2220 Male, age 76, midline 80.8
Periaquaductal grey, anterior
nTPM: 86.3
1947 Male, age 18, unknown 96.5
1795 Male, age 51, unknown 81.3
2502 Female, age 75, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 67.7
1831 Male, age 72, unknown 74.0
1840 Male, age 53, unknown 71.1
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 60.1
Periaquaductal grey, lateral
nTPM: 60.6
2053 Male, age 18, unknown 64.2
2140 Male, age 76, both hemispheres 59.4
2272 Male, age 74, both hemispheres 58.3
Pretectal area
nTPM: 99.6
1816 Male, age 51, unknown 144.4
1817 Female, age 42, unknown 137.8
2007 Male, age 72, unknown 135.4
1944 Female, age 72, unknown 126.5
1815 Male, age 53, unknown 101.5
2667 Female, age 75, unknown 97.1
2224 Female, age 72, unknown 85.6
2316 Male, age 76, right hemisphere 72.6
2407 Male, age 75, both hemispheres 67.3
2825 Male, age 18, unknown 67.2
2273 Male, age 74, both hemispheres 60.3
Red nucleus
nTPM: 89.7
1821 Female, age 72, unknown 148.0
2725 Female, age 75, unknown 103.6
2785 Male, age 18, unknown 100.6
1865 Male, age 51, unknown 90.2
2503 Female, age 72, unknown 89.9
1954 Female, age 42, unknown 86.4
2823 Male, age 76, right hemisphere 85.0
2227 Male, age 72, unknown 84.3
2769 Male, age 72, unknown 80.0
1904 Male, age 53, unknown 74.4
2588 Male, age 74, left hemisphere 69.8
2584 Male, age 75, left hemisphere 64.1
Substantia nigra
nTPM: 97.8
1889 Female, age 72, unknown 140.3
1916 Female, age 42, unknown 117.4
2665 Male, age 74, both hemispheres 111.8
1851 Male, age 51, unknown 105.2
2409 Female, age 72, unknown 104.2
1941 Male, age 53, unknown 97.4
2241 Male, age 72, unknown 93.2
2699 Male, age 18, unknown 78.7
2590 Female, age 75, unknown 75.1
2583 Male, age 75, right hemisphere 54.7
Superior colliculus
nTPM: 84.1
1895 Male, age 76, right hemisphere 108.1
2587 Male, age 74, left hemisphere 97.4
2668 Female, age 75, unknown 92.4
2087 Female, age 72, unknown 90.3
1796 Male, age 53, unknown 84.3
2664 Male, age 75, both hemispheres 81.3
2261 Male, age 18, unknown 80.3
1839 Male, age 51, unknown 73.9
1913 Female, age 42, unknown 67.3
1995 Male, age 72, unknown 65.8
Ventral tegmental area
nTPM: 82.7
1915 Female, age 42, unknown 102.5
2410 Female, age 72, unknown 97.7
2218 Male, age 76, both hemispheres 92.9
2223 Female, age 72, unknown 72.7
1942 Male, age 51, unknown 69.0
2021 Male, age 53, unknown 61.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 354.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 354.9
Samples: 183

Max nTPM: 762.0
Min nTPM: 159.7
Std nTPM: 115.8
Median nTPM: 335.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 762.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 681.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 642.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 629.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 628.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 607.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 600.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 592.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 588.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 577.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 575.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 194.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 194.9
FF:10158-103A5 76 years, female 194.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1007.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1007.7
Samples: 4

Max nTPM: 1064.6
Min nTPM: 982.7
Sample A Male 1064.6
Sample B Male 986.8
Sample C Female 982.7
Sample D Female 996.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
77340502 Antisense, RP_070116_02_D11, Mouse strain C57BL/6J (56 days, male) 3.8
71763912 Antisense, RP_050921_02_H02, Mouse strain C57BL/6J (56 days, male) 2.7

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