MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA Brain:79.9 nTPM
GTEx:32.4 nTPM
FANTOM5:92.9 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:35.0 nTPM
Allen mouse:5.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.3
2019 Male, age 18, unknown 92.1
2666 Male, age 74, left hemisphere 77.4
1833 Male, age 53, unknown 75.1
1870 Female, age 42, unknown 74.4
2411 Female, age 72, unknown 73.9
1830 Male, age 51, unknown 73.7
2828 Female, age 72, unknown 72.2
1827 Male, age 72, unknown 68.2
2219 Male, age 76, both hemispheres 54.7
2586 Male, age 75, left hemisphere 50.8
Dorsal raphe nucleus
nTPM: 63.3
2750 Male, age 76, both hemispheres 72.0
1828 Male, age 53, unknown 65.5
2298 Female, age 72, unknown 61.8
2016 Female, age 72, unknown 60.8
2047 Male, age 72, unknown 56.6
Inferior colliculus
nTPM: 65.9
2097 Female, age 72, unknown 75.5
1890 Male, age 53, unknown 67.8
2849 Male, age 72, unknown 60.9
1848 Female, age 42, unknown 59.5
Median raphe nucleus
nTPM: 67.3
2220 Male, age 76, midline 67.3
Periaquaductal grey, anterior
nTPM: 63.8
2502 Female, age 75, unknown 71.1
1795 Male, age 51, unknown 63.0
1947 Male, age 18, unknown 57.4
Periaquaductal grey, dorsal
nTPM: 64.7
2850 Male, age 76, both hemispheres 72.9
1831 Male, age 72, unknown 72.7
2464 Female, age 72, unknown 60.5
1840 Male, age 53, unknown 52.5
Periaquaductal grey, lateral
nTPM: 67.9
2140 Male, age 76, both hemispheres 69.6
2053 Male, age 18, unknown 68.2
2272 Male, age 74, both hemispheres 65.9
Pretectal area
nTPM: 79.9
1817 Female, age 42, unknown 100.1
1944 Female, age 72, unknown 98.9
1816 Male, age 51, unknown 97.6
1815 Male, age 53, unknown 88.0
2007 Male, age 72, unknown 87.7
2316 Male, age 76, right hemisphere 72.7
2273 Male, age 74, both hemispheres 71.8
2667 Female, age 75, unknown 69.5
2224 Female, age 72, unknown 66.5
2407 Male, age 75, both hemispheres 65.9
2825 Male, age 18, unknown 59.9
Red nucleus
nTPM: 77.1
2785 Male, age 18, unknown 91.2
1904 Male, age 53, unknown 85.2
1865 Male, age 51, unknown 83.2
1821 Female, age 72, unknown 79.8
1954 Female, age 42, unknown 77.6
2503 Female, age 72, unknown 76.5
2227 Male, age 72, unknown 74.7
2725 Female, age 75, unknown 73.7
2769 Male, age 72, unknown 73.6
2823 Male, age 76, right hemisphere 70.2
2584 Male, age 75, left hemisphere 69.8
2588 Male, age 74, left hemisphere 69.7
Substantia nigra
nTPM: 71.4
1889 Female, age 72, unknown 88.9
2665 Male, age 74, both hemispheres 79.6
2409 Female, age 72, unknown 76.4
1851 Male, age 51, unknown 70.6
2583 Male, age 75, right hemisphere 70.6
1941 Male, age 53, unknown 69.4
2241 Male, age 72, unknown 69.0
2590 Female, age 75, unknown 67.0
1916 Female, age 42, unknown 66.8
2699 Male, age 18, unknown 55.9
Superior colliculus
nTPM: 75.9
2261 Male, age 18, unknown 88.5
2087 Female, age 72, unknown 87.6
1913 Female, age 42, unknown 86.8
2668 Female, age 75, unknown 83.9
1995 Male, age 72, unknown 81.1
2587 Male, age 74, left hemisphere 78.2
1796 Male, age 53, unknown 71.2
1895 Male, age 76, right hemisphere 63.1
1839 Male, age 51, unknown 61.5
2664 Male, age 75, both hemispheres 56.8
Ventral tegmental area
nTPM: 72.9
2223 Female, age 72, unknown 87.4
2410 Female, age 72, unknown 81.9
2218 Male, age 76, both hemispheres 78.2
2021 Male, age 53, unknown 66.8
1942 Male, age 51, unknown 63.4
1915 Female, age 42, unknown 59.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 183

Max nTPM: 57.6
Min nTPM: 17.9
Std nTPM: 6.5
Median nTPM: 31.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 57.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 55.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 45.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 45.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 44.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 43.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.9
FF:10158-103A5 76 years, female 92.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 36.0
Min nTPM: 29.4
Sample A Female 36.0
Sample B Female 29.4
Sample C Male 34.6
Sample D Male 32.5
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 47.7
Min nTPM: 28.6
Sample A Female 44.1
Sample B Female 35.7
Sample C Male 47.7
Sample D Male 28.6
Periaqueductal gray
nTPM: 31.2
Samples: 3

Max nTPM: 33.1
Min nTPM: 30.2
Sample B Female 33.1
Sample C Male 30.3
Sample D Male 30.2
Superior colliculi
nTPM: 32.7
Samples: 4

Max nTPM: 39.6
Min nTPM: 27.9
Sample A Female 31.9
Sample B Female 27.9
Sample C Male 39.6
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 37.3
Sample C Female 37.3
Sample D Female 34.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
69173488 Antisense, RP_050329_01_F07, Mouse strain C57BL/6J (56 days, male) 5.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo