MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:93.1 nTPM
GTEx:65.1 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:51.4 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.2
2411 Female, age 72, unknown 101.8
2586 Male, age 75, left hemisphere 100.5
1830 Male, age 51, unknown 94.9
1870 Female, age 42, unknown 91.2
1833 Male, age 53, unknown 90.1
2019 Male, age 18, unknown 75.0
1827 Male, age 72, unknown 71.2
2828 Female, age 72, unknown 69.5
2666 Male, age 74, left hemisphere 65.3
2219 Male, age 76, both hemispheres 53.0
Dorsal raphe nucleus
nTPM: 80.8
2750 Male, age 76, both hemispheres 98.1
1828 Male, age 53, unknown 82.5
2047 Male, age 72, unknown 81.6
2016 Female, age 72, unknown 77.3
2298 Female, age 72, unknown 64.7
Inferior colliculus
nTPM: 77.0
1848 Female, age 42, unknown 86.0
2849 Male, age 72, unknown 85.7
1890 Male, age 53, unknown 74.2
2097 Female, age 72, unknown 62.0
Median raphe nucleus
nTPM: 61.9
2220 Male, age 76, midline 61.9
Periaquaductal grey, anterior
nTPM: 76.2
2502 Female, age 75, unknown 90.9
1947 Male, age 18, unknown 74.9
1795 Male, age 51, unknown 62.7
Periaquaductal grey, dorsal
nTPM: 58.6
2464 Female, age 72, unknown 74.0
1840 Male, age 53, unknown 62.0
2850 Male, age 76, both hemispheres 53.4
1831 Male, age 72, unknown 45.1
Periaquaductal grey, lateral
nTPM: 60.0
2140 Male, age 76, both hemispheres 62.1
2272 Male, age 74, both hemispheres 62.1
2053 Male, age 18, unknown 55.7
Pretectal area
nTPM: 57.9
2316 Male, age 76, right hemisphere 90.6
2825 Male, age 18, unknown 77.5
2407 Male, age 75, both hemispheres 72.4
2224 Female, age 72, unknown 63.0
2007 Male, age 72, unknown 56.1
2273 Male, age 74, both hemispheres 53.7
2667 Female, age 75, unknown 51.9
1815 Male, age 53, unknown 50.9
1817 Female, age 42, unknown 46.2
1816 Male, age 51, unknown 37.9
1944 Female, age 72, unknown 36.8
Red nucleus
nTPM: 93.1
2227 Male, age 72, unknown 114.2
2769 Male, age 72, unknown 106.2
2503 Female, age 72, unknown 101.2
1904 Male, age 53, unknown 99.2
1954 Female, age 42, unknown 92.3
2823 Male, age 76, right hemisphere 92.0
1865 Male, age 51, unknown 91.6
1821 Female, age 72, unknown 91.5
2588 Male, age 74, left hemisphere 88.5
2785 Male, age 18, unknown 86.8
2584 Male, age 75, left hemisphere 78.8
2725 Female, age 75, unknown 74.5
Substantia nigra
nTPM: 70.0
1916 Female, age 42, unknown 82.6
1851 Male, age 51, unknown 82.5
2583 Male, age 75, right hemisphere 80.3
2699 Male, age 18, unknown 73.8
1941 Male, age 53, unknown 70.5
2590 Female, age 75, unknown 69.2
2241 Male, age 72, unknown 64.7
1889 Female, age 72, unknown 62.3
2409 Female, age 72, unknown 58.0
2665 Male, age 74, both hemispheres 56.5
Superior colliculus
nTPM: 67.8
1839 Male, age 51, unknown 84.2
1895 Male, age 76, right hemisphere 78.1
2664 Male, age 75, both hemispheres 76.3
2668 Female, age 75, unknown 74.1
1913 Female, age 42, unknown 72.3
1796 Male, age 53, unknown 67.6
2587 Male, age 74, left hemisphere 65.6
1995 Male, age 72, unknown 62.6
2261 Male, age 18, unknown 55.3
2087 Female, age 72, unknown 42.2
Ventral tegmental area
nTPM: 78.3
2223 Female, age 72, unknown 95.5
2410 Female, age 72, unknown 81.8
1915 Female, age 42, unknown 79.2
1942 Male, age 51, unknown 77.5
2218 Male, age 76, both hemispheres 72.2
2021 Male, age 53, unknown 63.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 183

Max nTPM: 182.5
Min nTPM: 25.7
Std nTPM: 23.7
Median nTPM: 60.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 182.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 181.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 150.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 129.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 122.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 110.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 108.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 107.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 105.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 105.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 103.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.2
FF:10158-103A5 76 years, female 89.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 71.0
Min nTPM: 52.8
Sample A Female 71.0
Sample B Female 64.9
Sample C Male 52.8
Sample D Male 66.5
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 138.9
Min nTPM: 27.6
Sample A Female 138.9
Sample B Female 74.3
Sample C Male 33.3
Sample D Male 27.6
Periaqueductal gray
nTPM: 44.7
Samples: 3

Max nTPM: 60.0
Min nTPM: 35.4
Sample B Female 60.0
Sample C Male 38.6
Sample D Male 35.4
Superior colliculi
nTPM: 54.1
Samples: 4

Max nTPM: 77.8
Min nTPM: 41.7
Sample A Female 51.3
Sample B Female 77.8
Sample C Male 45.4
Sample D Male 41.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.4
Samples: 4

Max nTPM: 54.8
Min nTPM: 47.6
Sample A Male 49.0
Sample B Male 47.6
Sample C Female 54.1
Sample D Female 54.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70473945 Antisense, RP_050614_04_F02, Mouse strain C57BL/6J (56 days, male) 1.4

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