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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.9
nTPM
HPA Brain:
179.1
nTPM
GTEx:
19.9
nTPM
FANTOM5:
132.5
Scaled Tags Per Million
Pig:
175.4
nTPM
Mouse:
67.2
nTPM
Allen mouse:
17.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
179.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 133.5
2019
Male, age 18, unknown
183.6
2586
Male, age 75, left hemisphere
172.4
2411
Female, age 72, unknown
152.5
1827
Male, age 72, unknown
146.8
2828
Female, age 72, unknown
126.7
2666
Male, age 74, left hemisphere
119.9
1833
Male, age 53, unknown
114.1
2219
Male, age 76, both hemispheres
110.5
1870
Female, age 42, unknown
109.3
1830
Male, age 51, unknown
99.7
Dorsal raphe nucleus nTPM: 129.9
2298
Female, age 72, unknown
161.4
1828
Male, age 53, unknown
137.5
2047
Male, age 72, unknown
121.8
2016
Female, age 72, unknown
121.1
2750
Male, age 76, both hemispheres
107.5
Inferior colliculus nTPM: 125.2
2097
Female, age 72, unknown
145.5
1890
Male, age 53, unknown
137.4
1848
Female, age 42, unknown
119.9
2849
Male, age 72, unknown
98.1
Median raphe nucleus nTPM: 112.7
2220
Male, age 76, midline
112.7
Periaquaductal grey, anterior nTPM: 132.0
2502
Female, age 75, unknown
152.6
1795
Male, age 51, unknown
138.9
1947
Male, age 18, unknown
104.4
Periaquaductal grey, dorsal nTPM: 119.7
2464
Female, age 72, unknown
131.7
1840
Male, age 53, unknown
128.0
1831
Male, age 72, unknown
122.2
2850
Male, age 76, both hemispheres
96.7
Periaquaductal grey, lateral nTPM: 116.1
2053
Male, age 18, unknown
119.0
2140
Male, age 76, both hemispheres
115.2
2272
Male, age 74, both hemispheres
114.0
Pretectal area nTPM: 179.1
1816
Male, age 51, unknown
273.5
2007
Male, age 72, unknown
269.4
1817
Female, age 42, unknown
232.6
1815
Male, age 53, unknown
213.8
1944
Female, age 72, unknown
204.4
2667
Female, age 75, unknown
162.0
2273
Male, age 74, both hemispheres
143.6
2224
Female, age 72, unknown
134.4
2407
Male, age 75, both hemispheres
128.1
2316
Male, age 76, right hemisphere
105.0
2825
Male, age 18, unknown
103.5
Red nucleus nTPM: 131.7
2785
Male, age 18, unknown
190.6
2503
Female, age 72, unknown
156.5
1821
Female, age 72, unknown
138.7
2588
Male, age 74, left hemisphere
138.4
2584
Male, age 75, left hemisphere
133.1
1904
Male, age 53, unknown
124.5
2227
Male, age 72, unknown
123.5
2769
Male, age 72, unknown
120.0
1865
Male, age 51, unknown
119.8
2725
Female, age 75, unknown
119.2
1954
Female, age 42, unknown
109.2
2823
Male, age 76, right hemisphere
106.4
Substantia nigra nTPM: 136.6
1889
Female, age 72, unknown
173.6
2665
Male, age 74, both hemispheres
154.8
2583
Male, age 75, right hemisphere
151.0
1916
Female, age 42, unknown
149.3
1851
Male, age 51, unknown
145.7
2409
Female, age 72, unknown
142.1
2590
Female, age 75, unknown
135.7
1941
Male, age 53, unknown
117.8
2241
Male, age 72, unknown
104.2
2699
Male, age 18, unknown
92.1
Superior colliculus nTPM: 147.3
2261
Male, age 18, unknown
204.2
2087
Female, age 72, unknown
197.0
1995
Male, age 72, unknown
154.4
1796
Male, age 53, unknown
144.1
2668
Female, age 75, unknown
139.5
2664
Male, age 75, both hemispheres
137.2
1913
Female, age 42, unknown
135.3
2587
Male, age 74, left hemisphere
132.9
1839
Male, age 51, unknown
117.5
1895
Male, age 76, right hemisphere
110.8
Ventral tegmental area nTPM: 125.7
2410
Female, age 72, unknown
168.9
1915
Female, age 42, unknown
128.4
2218
Male, age 76, both hemispheres
123.5
1942
Male, age 51, unknown
116.5
2223
Female, age 72, unknown
111.3
2021
Male, age 53, unknown
105.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 19.9
Samples: 139
Max nTPM: 53.8
Min nTPM: 5.5
Std nTPM: 9.8
Median nTPM: 16.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
53.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
47.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
45.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
43.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
43.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
43.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
42.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
39.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
38.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
37.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
36.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
35.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
34.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
33.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
33.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
33.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
32.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
31.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
31.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
31.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
31.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
30.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
30.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
29.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
29.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
29.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
28.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
28.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
28.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
28.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
27.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
27.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
24.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
24.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
24.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
23.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
22.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
21.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
21.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
21.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
21.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
19.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
18.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
18.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
18.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
18.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
18.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
17.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
17.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
17.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
17.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
16.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
16.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
16.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
16.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
16.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
16.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
16.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
16.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
15.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
15.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
15.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
15.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
15.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
15.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
14.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
14.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
14.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
14.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
14.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
14.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
14.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
14.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
13.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
13.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
13.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
13.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
13.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
13.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
13.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
13.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
13.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
13.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
12.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
12.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
12.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
11.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
11.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
11.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
11.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
11.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
11.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
11.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
11.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
11.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
11.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
11.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
11.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
10.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
10.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
10.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
8.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
7.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
5.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 67.2
Samples: 4
Max nTPM: 78.5
Min nTPM: 47.3
Sample A
Male
47.3
Sample B
Male
71.8
Sample C
Female
71.1
Sample D
Female
78.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.