On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
98.0
nTPM
HPA Brain:
129.7
nTPM
GTEx:
98.0
nTPM
FANTOM5:
83.4
Scaled Tags Per Million
Macaque:
66.8
nTPM
Mouse:
92.5
nTPM
Rat:
66.2
nTPM
Pig:
167.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 125.7
2586
Male, age 75, left hemisphere
178.8
2666
Male, age 74, left hemisphere
135.2
2828
Female, age 72, unknown
130.5
2019
Male, age 18, unknown
126.4
1827
Male, age 72, unknown
122.9
1833
Male, age 53, unknown
115.9
1870
Female, age 42, unknown
114.8
1830
Male, age 51, unknown
111.9
2411
Female, age 72, unknown
110.8
2219
Male, age 76, both hemispheres
109.5
Dorsal raphe nucleus nTPM: 112.2
2047
Male, age 72, unknown
116.9
1828
Male, age 53, unknown
116.3
2750
Male, age 76, both hemispheres
113.7
2298
Female, age 72, unknown
108.6
2016
Female, age 72, unknown
105.6
Inferior colliculus nTPM: 110.0
2849
Male, age 72, unknown
117.2
1890
Male, age 53, unknown
112.1
1848
Female, age 42, unknown
109.4
2097
Female, age 72, unknown
101.2
Median raphe nucleus nTPM: 114.5
2220
Male, age 76, midline
114.5
Periaquaductal grey, anterior nTPM: 123.0
2502
Female, age 75, unknown
127.7
1795
Male, age 51, unknown
123.2
1947
Male, age 18, unknown
118.2
Periaquaductal grey, dorsal nTPM: 107.5
2850
Male, age 76, both hemispheres
111.9
1840
Male, age 53, unknown
110.0
1831
Male, age 72, unknown
104.6
2464
Female, age 72, unknown
103.4
Periaquaductal grey, lateral nTPM: 99.6
2140
Male, age 76, both hemispheres
102.8
2272
Male, age 74, both hemispheres
98.9
2053
Male, age 18, unknown
97.1
Pretectal area nTPM: 117.1
1817
Female, age 42, unknown
141.1
1816
Male, age 51, unknown
138.1
2007
Male, age 72, unknown
131.6
1944
Female, age 72, unknown
131.1
1815
Male, age 53, unknown
127.7
2667
Female, age 75, unknown
121.5
2407
Male, age 75, both hemispheres
111.5
2825
Male, age 18, unknown
106.2
2224
Female, age 72, unknown
98.1
2273
Male, age 74, both hemispheres
94.8
2316
Male, age 76, right hemisphere
86.9
Red nucleus nTPM: 121.9
2584
Male, age 75, left hemisphere
148.0
2785
Male, age 18, unknown
134.4
2588
Male, age 74, left hemisphere
126.4
2769
Male, age 72, unknown
124.5
1865
Male, age 51, unknown
123.2
1904
Male, age 53, unknown
120.6
1821
Female, age 72, unknown
117.8
2227
Male, age 72, unknown
117.3
1954
Female, age 42, unknown
114.9
2503
Female, age 72, unknown
114.9
2823
Male, age 76, right hemisphere
110.9
2725
Female, age 75, unknown
110.1
Substantia nigra nTPM: 129.7
1916
Female, age 42, unknown
159.5
1851
Male, age 51, unknown
142.2
2665
Male, age 74, both hemispheres
140.9
2583
Male, age 75, right hemisphere
140.3
2699
Male, age 18, unknown
130.8
1941
Male, age 53, unknown
129.5
1889
Female, age 72, unknown
127.2
2590
Female, age 75, unknown
117.2
2241
Male, age 72, unknown
106.6
2409
Female, age 72, unknown
102.4
Superior colliculus nTPM: 120.6
2664
Male, age 75, both hemispheres
154.9
2668
Female, age 75, unknown
133.1
2087
Female, age 72, unknown
124.2
2261
Male, age 18, unknown
121.8
1995
Male, age 72, unknown
119.9
1796
Male, age 53, unknown
118.6
1913
Female, age 42, unknown
117.7
1839
Male, age 51, unknown
110.2
2587
Male, age 74, left hemisphere
105.2
1895
Male, age 76, right hemisphere
100.3
Ventral tegmental area nTPM: 121.7
2410
Female, age 72, unknown
135.4
1915
Female, age 42, unknown
127.7
2218
Male, age 76, both hemispheres
125.0
2223
Female, age 72, unknown
122.7
2021
Male, age 53, unknown
110.1
1942
Male, age 51, unknown
109.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 98.0
Samples: 183
Max nTPM: 194.4
Min nTPM: 57.2
Std nTPM: 16.3
Median nTPM: 96.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
194.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
177.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
145.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
134.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
130.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
129.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
128.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
124.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
124.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
123.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
122.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
118.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
118.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
118.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
118.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
117.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
116.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
115.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
115.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
114.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
114.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
113.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
113.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
113.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
113.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
113.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
111.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
110.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
110.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
110.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
110.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
110.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
109.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
109.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
109.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
108.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
107.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
107.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
107.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
107.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
106.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
105.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
105.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
104.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
104.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
104.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
103.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
103.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
103.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
102.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
102.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
102.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
102.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
102.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
102.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
102.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
102.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
101.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
101.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
101.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
101.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
101.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
101.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
101.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
101.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
101.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
101.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
100.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
99.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
99.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
99.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
99.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
99.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
98.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
98.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
98.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
98.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
98.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
98.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
98.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
98.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
97.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
97.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
97.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
97.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
97.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
97.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
96.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
96.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
96.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
96.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
96.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
96.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
96.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
96.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
95.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
95.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
95.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
95.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
95.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
95.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
94.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
94.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
94.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
94.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
94.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
94.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
94.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
94.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
94.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
94.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
94.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
93.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
93.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
93.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
93.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
93.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
93.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
93.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
92.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
91.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
91.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
91.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
91.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
90.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
90.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
90.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
90.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
90.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
89.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
89.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
89.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
88.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
88.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
88.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
88.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
88.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
88.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
87.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
87.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
87.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
87.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
87.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
86.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
86.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
86.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
86.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
86.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
86.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
85.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
85.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
84.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
84.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
84.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
84.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
83.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
83.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
83.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
83.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
83.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
83.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
83.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
83.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
82.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
82.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
81.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
80.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
80.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
79.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
77.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
77.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
77.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
77.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
77.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
77.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
77.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
76.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
73.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
73.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
69.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
62.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
61.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
57.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 40.4
Samples: 1
Max nTPM: 40.4
Min nTPM: 40.4
Sample A
40.4
Midbrain nTPM: 50.3
Samples: 1
Max nTPM: 50.3
Min nTPM: 50.3
Sample A
50.3
Superior colliculi nTPM: 66.8
Samples: 1
Max nTPM: 66.8
Min nTPM: 66.8
Sample A
66.8
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 125.5
Samples: 3
Max nTPM: 142.9
Min nTPM: 95.3
Sample A
Female
138.3
Sample B
Female
95.3
Sample C
Male
142.9
Midbrain nTPM: 167.5
Samples: 3
Max nTPM: 272.7
Min nTPM: 101.6
Sample B
Female
101.6
Sample C
Male
272.7
Sample D
Male
128.3
Periaqueductal gray nTPM: 95.7
Samples: 3
Max nTPM: 117.5
Min nTPM: 83.6
Sample B
Female
83.6
Sample C
Male
117.5
Sample D
Male
86.0
Superior colliculi nTPM: 122.8
Samples: 4
Max nTPM: 139.3
Min nTPM: 93.2
Sample A
Female
130.4
Sample B
Female
93.2
Sample C
Male
139.3
Sample D
Male
128.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 92.5
Samples: 4
Max nTPM: 100.7
Min nTPM: 88.8
Sample A
91.3
Sample B
100.7
Sample C
89.1
Sample D
88.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.2
Rat sample
Sample description
nTPM
Midbrain nTPM: 66.2
Samples: 4
Max nTPM: 67.3
Min nTPM: 63.9
Sample A
66.9
Sample A
66.8
Sample A
67.3
Sample A
63.9
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The Human Protein Atlas project is funded
