MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.4 nTPM
HPA Brain:56.4 nTPM
GTEx:81.4 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:51.2 nTPM
Allen mouse:6.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.0
2666 Male, age 74, left hemisphere 83.7
2586 Male, age 75, left hemisphere 53.0
2411 Female, age 72, unknown 51.1
2019 Male, age 18, unknown 47.6
1833 Male, age 53, unknown 44.8
1830 Male, age 51, unknown 44.1
2828 Female, age 72, unknown 42.7
1827 Male, age 72, unknown 41.6
1870 Female, age 42, unknown 41.3
2219 Male, age 76, both hemispheres 29.6
Dorsal raphe nucleus
nTPM: 45.7
1828 Male, age 53, unknown 52.0
2047 Male, age 72, unknown 48.2
2298 Female, age 72, unknown 44.6
2750 Male, age 76, both hemispheres 44.6
2016 Female, age 72, unknown 38.9
Inferior colliculus
nTPM: 40.6
1890 Male, age 53, unknown 43.3
2097 Female, age 72, unknown 42.5
2849 Male, age 72, unknown 38.8
1848 Female, age 42, unknown 37.8
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Periaquaductal grey, anterior
nTPM: 39.2
1947 Male, age 18, unknown 41.7
2502 Female, age 75, unknown 39.8
1795 Male, age 51, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 38.2
2464 Female, age 72, unknown 37.9
1831 Male, age 72, unknown 35.2
1840 Male, age 53, unknown 32.5
Periaquaductal grey, lateral
nTPM: 35.1
2140 Male, age 76, both hemispheres 39.5
2272 Male, age 74, both hemispheres 33.8
2053 Male, age 18, unknown 32.0
Pretectal area
nTPM: 41.7
1817 Female, age 42, unknown 49.7
1944 Female, age 72, unknown 48.5
1816 Male, age 51, unknown 47.1
2007 Male, age 72, unknown 46.6
2667 Female, age 75, unknown 45.7
1815 Male, age 53, unknown 45.6
2407 Male, age 75, both hemispheres 41.3
2825 Male, age 18, unknown 37.9
2224 Female, age 72, unknown 33.7
2316 Male, age 76, right hemisphere 33.3
2273 Male, age 74, both hemispheres 28.7
Red nucleus
nTPM: 51.5
1821 Female, age 72, unknown 63.4
1954 Female, age 42, unknown 60.9
1904 Male, age 53, unknown 55.4
2503 Female, age 72, unknown 55.1
1865 Male, age 51, unknown 53.2
2785 Male, age 18, unknown 50.3
2769 Male, age 72, unknown 49.7
2823 Male, age 76, right hemisphere 49.4
2227 Male, age 72, unknown 47.8
2584 Male, age 75, left hemisphere 47.3
2588 Male, age 74, left hemisphere 45.3
2725 Female, age 75, unknown 40.5
Substantia nigra
nTPM: 56.4
1916 Female, age 42, unknown 84.8
2409 Female, age 72, unknown 67.8
2241 Male, age 72, unknown 64.7
1851 Male, age 51, unknown 59.4
2699 Male, age 18, unknown 58.8
1889 Female, age 72, unknown 53.5
2583 Male, age 75, right hemisphere 52.4
1941 Male, age 53, unknown 47.4
2665 Male, age 74, both hemispheres 42.5
2590 Female, age 75, unknown 32.4
Superior colliculus
nTPM: 43.7
2668 Female, age 75, unknown 79.2
2087 Female, age 72, unknown 48.8
1796 Male, age 53, unknown 44.6
2261 Male, age 18, unknown 43.2
1913 Female, age 42, unknown 40.2
1995 Male, age 72, unknown 38.8
1839 Male, age 51, unknown 37.8
2664 Male, age 75, both hemispheres 35.5
2587 Male, age 74, left hemisphere 34.9
1895 Male, age 76, right hemisphere 33.7
Ventral tegmental area
nTPM: 47.7
1915 Female, age 42, unknown 60.7
2410 Female, age 72, unknown 57.7
1942 Male, age 51, unknown 46.4
2218 Male, age 76, both hemispheres 41.2
2223 Female, age 72, unknown 40.2
2021 Male, age 53, unknown 40.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 81.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.4
Samples: 183

Max nTPM: 327.8
Min nTPM: 33.6
Std nTPM: 50.6
Median nTPM: 66.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 327.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 326.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 313.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 300.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 249.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 225.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 210.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 197.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 189.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 177.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 175.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.0
FF:10158-103A5 76 years, female 83.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 32.3
Sample A Female 49.1
Sample B Female 34.3
Sample C Male 41.0
Sample D Male 32.3
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 47.7
Min nTPM: 34.4
Sample A Female 34.4
Sample B Female 38.3
Sample C Male 38.3
Sample D Male 47.7
Periaqueductal gray
nTPM: 34.4
Samples: 3

Max nTPM: 36.7
Min nTPM: 30.3
Sample B Female 30.3
Sample C Male 36.7
Sample D Male 36.3
Superior colliculi
nTPM: 39.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 30.5
Sample A Female 50.1
Sample B Female 30.5
Sample C Male 35.6
Sample D Male 40.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 53.9
Min nTPM: 48.2
Sample A Male 53.9
Sample B Male 48.2
Sample C Female 49.8
Sample D Female 52.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
564779 Antisense, RP_040826_01_F06, Mouse strain C57BL/6J (56 days, male) 6.9

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