MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA Brain:125.4 nTPM
GTEx:34.2 nTPM
FANTOM5:107.0 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:39.0 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.6
2586 Male, age 75, left hemisphere 141.7
2019 Male, age 18, unknown 140.3
2666 Male, age 74, left hemisphere 134.7
2411 Female, age 72, unknown 129.5
1830 Male, age 51, unknown 125.9
1827 Male, age 72, unknown 125.4
2828 Female, age 72, unknown 120.9
1833 Male, age 53, unknown 119.9
1870 Female, age 42, unknown 115.5
2219 Male, age 76, both hemispheres 92.3
Dorsal raphe nucleus
nTPM: 106.6
2750 Male, age 76, both hemispheres 110.3
2047 Male, age 72, unknown 109.3
2016 Female, age 72, unknown 106.5
1828 Male, age 53, unknown 103.6
2298 Female, age 72, unknown 103.2
Inferior colliculus
nTPM: 101.1
2097 Female, age 72, unknown 104.6
1848 Female, age 42, unknown 102.4
2849 Male, age 72, unknown 99.1
1890 Male, age 53, unknown 98.2
Median raphe nucleus
nTPM: 103.5
2220 Male, age 76, midline 103.5
Periaquaductal grey, anterior
nTPM: 118.7
2502 Female, age 75, unknown 124.4
1947 Male, age 18, unknown 120.6
1795 Male, age 51, unknown 111.1
Periaquaductal grey, dorsal
nTPM: 97.5
2464 Female, age 72, unknown 112.3
1831 Male, age 72, unknown 98.4
2850 Male, age 76, both hemispheres 89.7
1840 Male, age 53, unknown 89.6
Periaquaductal grey, lateral
nTPM: 97.2
2053 Male, age 18, unknown 110.4
2272 Male, age 74, both hemispheres 91.9
2140 Male, age 76, both hemispheres 89.2
Pretectal area
nTPM: 114.1
1817 Female, age 42, unknown 127.1
2316 Male, age 76, right hemisphere 125.3
2407 Male, age 75, both hemispheres 124.9
2007 Male, age 72, unknown 123.7
1815 Male, age 53, unknown 123.5
1944 Female, age 72, unknown 116.0
1816 Male, age 51, unknown 110.0
2667 Female, age 75, unknown 108.2
2825 Male, age 18, unknown 108.1
2224 Female, age 72, unknown 96.2
2273 Male, age 74, both hemispheres 91.8
Red nucleus
nTPM: 125.4
2588 Male, age 74, left hemisphere 142.9
2584 Male, age 75, left hemisphere 138.9
1865 Male, age 51, unknown 134.7
2823 Male, age 76, right hemisphere 133.5
1904 Male, age 53, unknown 128.6
2785 Male, age 18, unknown 128.3
2503 Female, age 72, unknown 127.6
2769 Male, age 72, unknown 125.2
2227 Male, age 72, unknown 119.7
1954 Female, age 42, unknown 114.5
1821 Female, age 72, unknown 113.4
2725 Female, age 75, unknown 97.1
Substantia nigra
nTPM: 106.9
2583 Male, age 75, right hemisphere 128.5
1941 Male, age 53, unknown 118.9
1889 Female, age 72, unknown 112.1
2590 Female, age 75, unknown 108.5
1851 Male, age 51, unknown 107.8
1916 Female, age 42, unknown 104.0
2241 Male, age 72, unknown 99.4
2409 Female, age 72, unknown 99.1
2665 Male, age 74, both hemispheres 95.6
2699 Male, age 18, unknown 95.1
Superior colliculus
nTPM: 120.6
2668 Female, age 75, unknown 150.8
1913 Female, age 42, unknown 134.7
2664 Male, age 75, both hemispheres 134.3
1995 Male, age 72, unknown 118.4
1895 Male, age 76, right hemisphere 117.6
1796 Male, age 53, unknown 114.9
1839 Male, age 51, unknown 114.2
2087 Female, age 72, unknown 110.4
2587 Male, age 74, left hemisphere 107.0
2261 Male, age 18, unknown 104.1
Ventral tegmental area
nTPM: 106.4
2410 Female, age 72, unknown 117.8
1942 Male, age 51, unknown 110.3
1915 Female, age 42, unknown 105.3
2021 Male, age 53, unknown 104.6
2223 Female, age 72, unknown 101.1
2218 Male, age 76, both hemispheres 99.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.2
Samples: 183

Max nTPM: 73.9
Min nTPM: 16.2
Std nTPM: 8.8
Median nTPM: 32.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 73.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 70.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 61.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 58.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 57.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 49.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 49.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 49.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.0
FF:10158-103A5 76 years, female 107.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.2
Samples: 4

Max nTPM: 40.5
Min nTPM: 36.8
Sample A Female 39.8
Sample B Female 36.8
Sample C Male 39.5
Sample D Male 40.5
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 53.7
Min nTPM: 37.5
Sample A Female 37.5
Sample B Female 38.0
Sample C Male 53.7
Sample D Male 42.0
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 37.8
Min nTPM: 33.8
Sample B Female 37.8
Sample C Male 35.0
Sample D Male 33.8
Superior colliculi
nTPM: 47.7
Samples: 4

Max nTPM: 51.5
Min nTPM: 42.8
Sample A Female 42.8
Sample B Female 51.5
Sample C Male 48.5
Sample D Male 48.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.2
Sample A Male 37.2
Sample B Male 38.1
Sample C Female 42.0
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68158078 Antisense, RP_041116_02_G07, Mouse strain C57BL/6J (56 days, male) 2.7

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