MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:68.9 nTPM
GTEx:8.9 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:33.7 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.5
2666 Male, age 74, left hemisphere 85.1
2586 Male, age 75, left hemisphere 47.7
2219 Male, age 76, both hemispheres 45.9
2828 Female, age 72, unknown 38.7
1827 Male, age 72, unknown 33.4
1830 Male, age 51, unknown 30.1
1833 Male, age 53, unknown 29.1
1870 Female, age 42, unknown 25.7
2411 Female, age 72, unknown 21.1
2019 Male, age 18, unknown 18.2
Dorsal raphe nucleus
nTPM: 32.7
2298 Female, age 72, unknown 44.6
2750 Male, age 76, both hemispheres 36.4
2047 Male, age 72, unknown 32.8
1828 Male, age 53, unknown 24.9
2016 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 30.1
2097 Female, age 72, unknown 34.5
1890 Male, age 53, unknown 30.8
1848 Female, age 42, unknown 28.9
2849 Male, age 72, unknown 26.1
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 68.9
1947 Male, age 18, unknown 116.4
1795 Male, age 51, unknown 67.7
2502 Female, age 75, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 44.2
1831 Male, age 72, unknown 96.3
1840 Male, age 53, unknown 27.3
2850 Male, age 76, both hemispheres 27.3
2464 Female, age 72, unknown 25.9
Periaquaductal grey, lateral
nTPM: 23.8
2053 Male, age 18, unknown 28.0
2140 Male, age 76, both hemispheres 23.2
2272 Male, age 74, both hemispheres 20.2
Pretectal area
nTPM: 26.5
2825 Male, age 18, unknown 48.8
2224 Female, age 72, unknown 32.7
1817 Female, age 42, unknown 32.6
2407 Male, age 75, both hemispheres 31.2
2316 Male, age 76, right hemisphere 27.0
1815 Male, age 53, unknown 25.8
2007 Male, age 72, unknown 25.1
2667 Female, age 75, unknown 20.4
1944 Female, age 72, unknown 17.6
1816 Male, age 51, unknown 17.5
2273 Male, age 74, both hemispheres 12.8
Red nucleus
nTPM: 25.9
2584 Male, age 75, left hemisphere 48.9
2725 Female, age 75, unknown 31.2
1954 Female, age 42, unknown 28.5
1904 Male, age 53, unknown 28.3
2769 Male, age 72, unknown 25.7
2227 Male, age 72, unknown 25.3
1821 Female, age 72, unknown 23.4
1865 Male, age 51, unknown 22.2
2503 Female, age 72, unknown 20.7
2588 Male, age 74, left hemisphere 19.1
2785 Male, age 18, unknown 18.9
2823 Male, age 76, right hemisphere 18.7
Substantia nigra
nTPM: 26.0
2583 Male, age 75, right hemisphere 49.0
2590 Female, age 75, unknown 39.9
2665 Male, age 74, both hemispheres 32.2
1916 Female, age 42, unknown 23.2
2409 Female, age 72, unknown 22.4
1941 Male, age 53, unknown 21.6
1851 Male, age 51, unknown 20.9
1889 Female, age 72, unknown 18.9
2241 Male, age 72, unknown 17.3
2699 Male, age 18, unknown 14.0
Superior colliculus
nTPM: 26.9
1796 Male, age 53, unknown 40.5
2668 Female, age 75, unknown 37.5
2664 Male, age 75, both hemispheres 35.4
1839 Male, age 51, unknown 35.0
2587 Male, age 74, left hemisphere 28.3
1895 Male, age 76, right hemisphere 24.6
2261 Male, age 18, unknown 21.8
2087 Female, age 72, unknown 17.7
1995 Male, age 72, unknown 14.4
1913 Female, age 42, unknown 14.0
Ventral tegmental area
nTPM: 31.1
1942 Male, age 51, unknown 37.9
2223 Female, age 72, unknown 37.9
2021 Male, age 53, unknown 35.9
2218 Male, age 76, both hemispheres 29.0
1915 Female, age 42, unknown 25.8
2410 Female, age 72, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 183

Max nTPM: 29.2
Min nTPM: 1.8
Std nTPM: 4.3
Median nTPM: 8.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 29.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 24.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 23.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 22.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 20.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 19.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 18.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 15.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 15.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 64.9
Min nTPM: 4.5
Sample A Female 9.9
Sample B Female 64.9
Sample C Male 4.5
Sample D Male 5.6
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 21.9
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 12.0
Sample C Male 20.4
Sample D Male 21.9
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.4
Sample B Female 5.5
Sample C Male 5.4
Sample D Male 4.4
Superior colliculi
nTPM: 86.3
Samples: 4

Max nTPM: 236.2
Min nTPM: 4.5
Sample A Female 95.9
Sample B Female 236.2
Sample C Male 4.5
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 35.7
Min nTPM: 32.8
Sample A Male 35.7
Sample B Male 33.1
Sample C Female 32.8
Sample D Female 33.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70191973 Antisense, RP_050517_01_A02, Mouse strain C57BL/6J (56 days, male) 2.7
73521826 Antisense, RP_051101_03_B10, Mouse strain C57BL/6J (56 days, male) 2.1

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