MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA Brain:95.8 nTPM
GTEx:32.7 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:22.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.6
2019 Male, age 18, unknown 95.4
2586 Male, age 75, left hemisphere 89.0
1870 Female, age 42, unknown 85.7
2411 Female, age 72, unknown 85.1
1827 Male, age 72, unknown 83.3
1833 Male, age 53, unknown 83.0
2828 Female, age 72, unknown 82.8
1830 Male, age 51, unknown 82.0
2666 Male, age 74, left hemisphere 78.6
2219 Male, age 76, both hemispheres 71.4
Dorsal raphe nucleus
nTPM: 92.3
2298 Female, age 72, unknown 95.2
2016 Female, age 72, unknown 93.0
2750 Male, age 76, both hemispheres 92.5
1828 Male, age 53, unknown 91.9
2047 Male, age 72, unknown 88.8
Inferior colliculus
nTPM: 79.3
2097 Female, age 72, unknown 84.3
1890 Male, age 53, unknown 81.7
1848 Female, age 42, unknown 76.4
2849 Male, age 72, unknown 74.8
Median raphe nucleus
nTPM: 88.9
2220 Male, age 76, midline 88.9
Periaquaductal grey, anterior
nTPM: 80.2
2502 Female, age 75, unknown 82.5
1947 Male, age 18, unknown 79.2
1795 Male, age 51, unknown 78.9
Periaquaductal grey, dorsal
nTPM: 88.2
2850 Male, age 76, both hemispheres 97.7
1840 Male, age 53, unknown 92.1
1831 Male, age 72, unknown 85.1
2464 Female, age 72, unknown 77.8
Periaquaductal grey, lateral
nTPM: 81.1
2140 Male, age 76, both hemispheres 88.9
2053 Male, age 18, unknown 80.5
2272 Male, age 74, both hemispheres 73.9
Pretectal area
nTPM: 86.5
1817 Female, age 42, unknown 97.0
1815 Male, age 53, unknown 96.9
2007 Male, age 72, unknown 95.9
1944 Female, age 72, unknown 88.8
1816 Male, age 51, unknown 87.4
2667 Female, age 75, unknown 87.0
2273 Male, age 74, both hemispheres 83.1
2224 Female, age 72, unknown 80.8
2316 Male, age 76, right hemisphere 80.3
2825 Male, age 18, unknown 78.0
2407 Male, age 75, both hemispheres 76.4
Red nucleus
nTPM: 86.3
1821 Female, age 72, unknown 99.7
1865 Male, age 51, unknown 89.6
2503 Female, age 72, unknown 89.5
1904 Male, age 53, unknown 89.1
2823 Male, age 76, right hemisphere 88.2
2785 Male, age 18, unknown 87.9
2725 Female, age 75, unknown 84.8
1954 Female, age 42, unknown 83.5
2227 Male, age 72, unknown 83.0
2584 Male, age 75, left hemisphere 81.3
2769 Male, age 72, unknown 80.0
2588 Male, age 74, left hemisphere 79.2
Substantia nigra
nTPM: 95.8
1916 Female, age 42, unknown 111.7
1851 Male, age 51, unknown 104.3
2409 Female, age 72, unknown 103.0
2241 Male, age 72, unknown 102.4
2699 Male, age 18, unknown 102.0
2665 Male, age 74, both hemispheres 95.0
1889 Female, age 72, unknown 93.1
1941 Male, age 53, unknown 84.5
2583 Male, age 75, right hemisphere 82.5
2590 Female, age 75, unknown 79.6
Superior colliculus
nTPM: 82.9
2668 Female, age 75, unknown 96.7
1913 Female, age 42, unknown 90.2
2587 Male, age 74, left hemisphere 88.3
1995 Male, age 72, unknown 87.8
2087 Female, age 72, unknown 80.7
2664 Male, age 75, both hemispheres 78.0
1839 Male, age 51, unknown 77.8
1895 Male, age 76, right hemisphere 77.6
1796 Male, age 53, unknown 77.5
2261 Male, age 18, unknown 74.3
Ventral tegmental area
nTPM: 93.9
2223 Female, age 72, unknown 98.5
2410 Female, age 72, unknown 98.1
2218 Male, age 76, both hemispheres 93.4
1915 Female, age 42, unknown 93.3
2021 Male, age 53, unknown 90.5
1942 Male, age 51, unknown 89.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 183

Max nTPM: 50.4
Min nTPM: 18.0
Std nTPM: 6.4
Median nTPM: 32.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 48.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 48.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 47.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 47.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 47.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 45.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 45.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 43.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.6
Sample A Female 30.9
Sample B Female 30.4
Sample C Male 27.1
Sample D Male 22.6
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 32.8
Min nTPM: 24.3
Sample A Female 32.8
Sample B Female 28.7
Sample C Male 24.3
Sample D Male 25.4
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 27.5
Min nTPM: 24.0
Sample B Female 27.5
Sample C Male 26.9
Sample D Male 24.0
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 26.5
Min nTPM: 22.5
Sample A Female 25.5
Sample B Female 26.5
Sample C Male 22.5
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 23.2
Min nTPM: 21.3
Sample A Male 21.3
Sample B Male 22.2
Sample C Female 21.4
Sample D Female 23.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70439147 Antisense, RP_050614_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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