MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:147.5 nTPM
HPA Brain:116.1 nTPM
GTEx:147.5 nTPM
FANTOM5:48.5 Scaled Tags Per Million
Pig:82.6 nTPM
Mouse:173.5 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.7
2586 Male, age 75, left hemisphere 137.7
2666 Male, age 74, left hemisphere 108.1
2219 Male, age 76, both hemispheres 105.0
1827 Male, age 72, unknown 101.4
2019 Male, age 18, unknown 95.7
2828 Female, age 72, unknown 95.0
1870 Female, age 42, unknown 84.2
2411 Female, age 72, unknown 83.8
1833 Male, age 53, unknown 80.2
1830 Male, age 51, unknown 76.2
Dorsal raphe nucleus
nTPM: 94.8
2047 Male, age 72, unknown 103.9
2298 Female, age 72, unknown 102.4
2750 Male, age 76, both hemispheres 100.9
1828 Male, age 53, unknown 96.0
2016 Female, age 72, unknown 70.9
Inferior colliculus
nTPM: 89.6
2097 Female, age 72, unknown 94.2
2849 Male, age 72, unknown 92.5
1890 Male, age 53, unknown 88.5
1848 Female, age 42, unknown 83.2
Median raphe nucleus
nTPM: 116.1
2220 Male, age 76, midline 116.1
Periaquaductal grey, anterior
nTPM: 111.6
1795 Male, age 51, unknown 118.6
2502 Female, age 75, unknown 110.4
1947 Male, age 18, unknown 105.9
Periaquaductal grey, dorsal
nTPM: 78.1
1840 Male, age 53, unknown 86.9
2850 Male, age 76, both hemispheres 78.6
2464 Female, age 72, unknown 73.8
1831 Male, age 72, unknown 73.3
Periaquaductal grey, lateral
nTPM: 74.2
2140 Male, age 76, both hemispheres 79.6
2053 Male, age 18, unknown 72.2
2272 Male, age 74, both hemispheres 70.8
Pretectal area
nTPM: 106.2
1816 Male, age 51, unknown 144.4
2007 Male, age 72, unknown 144.2
1944 Female, age 72, unknown 141.5
1817 Female, age 42, unknown 127.4
1815 Male, age 53, unknown 110.6
2224 Female, age 72, unknown 93.2
2667 Female, age 75, unknown 90.4
2825 Male, age 18, unknown 89.3
2316 Male, age 76, right hemisphere 80.9
2407 Male, age 75, both hemispheres 76.3
2273 Male, age 74, both hemispheres 69.6
Red nucleus
nTPM: 91.6
2725 Female, age 75, unknown 115.4
2785 Male, age 18, unknown 107.4
2588 Male, age 74, left hemisphere 100.6
2503 Female, age 72, unknown 98.2
2584 Male, age 75, left hemisphere 97.5
2227 Male, age 72, unknown 90.0
1954 Female, age 42, unknown 89.8
1821 Female, age 72, unknown 88.7
2769 Male, age 72, unknown 84.9
1904 Male, age 53, unknown 80.7
1865 Male, age 51, unknown 75.7
2823 Male, age 76, right hemisphere 70.8
Substantia nigra
nTPM: 115.9
1916 Female, age 42, unknown 173.8
1941 Male, age 53, unknown 135.3
1851 Male, age 51, unknown 125.8
1889 Female, age 72, unknown 125.3
2665 Male, age 74, both hemispheres 122.1
2241 Male, age 72, unknown 99.6
2409 Female, age 72, unknown 98.9
2699 Male, age 18, unknown 97.5
2583 Male, age 75, right hemisphere 96.8
2590 Female, age 75, unknown 84.4
Superior colliculus
nTPM: 92.3
2261 Male, age 18, unknown 111.2
2668 Female, age 75, unknown 110.7
1796 Male, age 53, unknown 108.9
2087 Female, age 72, unknown 106.5
1895 Male, age 76, right hemisphere 86.5
1839 Male, age 51, unknown 85.8
2664 Male, age 75, both hemispheres 85.6
2587 Male, age 74, left hemisphere 82.9
1913 Female, age 42, unknown 75.3
1995 Male, age 72, unknown 69.9
Ventral tegmental area
nTPM: 103.0
1915 Female, age 42, unknown 127.4
2218 Male, age 76, both hemispheres 118.9
2410 Female, age 72, unknown 102.8
1942 Male, age 51, unknown 97.8
2223 Female, age 72, unknown 92.7
2021 Male, age 53, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 147.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.5
Samples: 183

Max nTPM: 365.7
Min nTPM: 66.7
Std nTPM: 49.5
Median nTPM: 137.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 365.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 291.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 281.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 271.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 269.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 264.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 254.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 252.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 250.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 248.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 239.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.5
FF:10158-103A5 76 years, female 48.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.3
Samples: 4

Max nTPM: 93.1
Min nTPM: 44.6
Sample A Female 93.1
Sample B Female 51.1
Sample C Male 80.5
Sample D Male 44.6
Midbrain
nTPM: 73.1
Samples: 4

Max nTPM: 91.7
Min nTPM: 59.7
Sample A Female 59.7
Sample B Female 60.7
Sample C Male 91.7
Sample D Male 80.2
Periaqueductal gray
nTPM: 57.5
Samples: 3

Max nTPM: 73.7
Min nTPM: 46.8
Sample B Female 52.0
Sample C Male 73.7
Sample D Male 46.8
Superior colliculi
nTPM: 82.6
Samples: 4

Max nTPM: 94.4
Min nTPM: 69.6
Sample A Female 94.4
Sample B Female 69.6
Sample C Male 92.2
Sample D Male 74.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 173.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 173.5
Samples: 4

Max nTPM: 181.2
Min nTPM: 162.0
Sample A Male 181.2
Sample B Male 170.7
Sample C Female 162.0
Sample D Female 180.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71496300 Antisense, RP_050913_04_C05, Mouse strain C57BL/6J (56 days, male) 1.1

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