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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:100.4 nTPM
HPA Brain:98.5 nTPM
GTEx:100.4 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:60.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.8
2194 Female, age 79, both hemispheres 117.0
2565 Male, age 75, midline 108.0
1981 Female, age 72, midline 92.0
2816 Male, age 47, midline 79.5
2048 Male, age 55, midline 62.7
Cervical spinal cord, dorsal horn
nTPM: 89.5
2173 Female, age 72, unknown 96.2
2297 Male, age 75, both hemispheres 95.4
2069 Male, age 47, both hemispheres 91.8
2721 Male, age 90, both hemispheres 91.1
1877 Male, age 55, unknown 84.9
2296 Male, age 66, both hemispheres 77.9
Cervical spinal cord, ventral horn
nTPM: 98.5
2480 Male, age 75, both hemispheres 108.2
2068 Male, age 55, unknown 106.6
2820 Female, age 79, both hemispheres 104.9
2809 Male, age 90, both hemispheres 104.5
2295 Male, age 66, both hemispheres 98.4
2098 Female, age 72, unknown 68.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.4
Samples: 204

Max nTPM: 182.0
Min nTPM: 57.4
Std nTPM: 24.4
Median nTPM: 94.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 182.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 181.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 175.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 164.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 160.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 155.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 154.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 151.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 149.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 148.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 147.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 147.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 146.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 145.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 144.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 143.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 139.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 137.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 136.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 133.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 133.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 132.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 132.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 132.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 129.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 128.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 128.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 128.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 127.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 126.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 126.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 125.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 124.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 123.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 123.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 120.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 120.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 118.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 118.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 118.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 117.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 117.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 115.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 114.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 114.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 114.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 113.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 113.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 111.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 111.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 111.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 110.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 110.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 109.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 108.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 108.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 107.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 107.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 107.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 107.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 106.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 105.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 105.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 105.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 104.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 104.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 104.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 103.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 103.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 103.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 102.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 101.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 100.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 100.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 100.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 99.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 99.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 99.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 98.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 97.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 97.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 97.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 97.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 95.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 95.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 95.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 95.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 95.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 95.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 94.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 94.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 94.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 94.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 94.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 93.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 93.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 93.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 92.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 92.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 92.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 92.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 92.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 92.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 92.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 90.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 90.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 89.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 89.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 89.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 89.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 89.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 89.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 89.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 88.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 88.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 87.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 86.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 86.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 86.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 86.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 86.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 86.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 86.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 85.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 85.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 84.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 84.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 84.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 84.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 83.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 83.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 83.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 83.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 83.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 82.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 82.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 82.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 81.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 80.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 80.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 79.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 79.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 78.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 78.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 76.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 76.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 76.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 75.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 75.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 75.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 75.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 73.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 72.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 72.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 71.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 71.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 71.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 71.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 71.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 70.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 69.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 67.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 67.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 66.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 66.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 66.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 65.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 63.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 61.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 60.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 57.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 75.6
FF:10181-103D1 60 years, female 96.8
FF:10159-103A6 76 years, female 54.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.6
Samples: 4

Max nTPM: 61.5
Min nTPM: 43.2
Sample A Female 61.5
Sample B Female 43.2
Sample C Male 54.5
Sample D Male 59.1
Ventral spinal cord
nTPM: 60.4
Samples: 4

Max nTPM: 73.3
Min nTPM: 47.1
Sample A Female 57.5
Sample B Female 63.8
Sample C Male 73.3
Sample D Male 47.1

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