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  • CCDC85B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:325.8 nTPM
HPA Brain:195.4 nTPM
GTEx:325.8 nTPM
FANTOM5:170.6 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:10.2 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.4
Sample id Sample description nTPM
Amygdala
nTPM: 147.5
2517 Female, age 94, left hemisphere 176.4
2814 Male, age 76, right hemisphere 157.5
1987 Female, age 91, left hemisphere 138.1
2514 Male, age 75, right hemisphere 137.7
2695 Female, age 67, right hemisphere 127.7
Basal amygdala
nTPM: 179.4
2827 Female, age 67, right hemisphere 243.3
2609 Male, age 75, right hemisphere 183.9
2243 Female, age 91, right hemisphere 179.4
2110 Male, age 80, left hemisphere 174.1
2685 Female, age 94, left hemisphere 167.2
1955 Male, age 76, both hemispheres 128.5
Central amygdala
nTPM: 180.6
2826 Female, age 94, left hemisphere 294.5
2515 Male, age 75, right hemisphere 176.9
2239 Male, age 80, left hemisphere 175.4
1905 Male, age 76, both hemispheres 158.4
2701 Female, age 91, right hemisphere 97.8
Corticomedial amygdala
nTPM: 157.6
2535 Female, age 67, right hemisphere 203.7
2829 Male, age 80, left hemisphere 187.8
2242 Female, age 91, right hemisphere 169.6
2428 Male, age 75, right hemisphere 156.3
2429 Female, age 94, left hemisphere 134.8
2240 Male, age 76, both hemispheres 93.3
Lateral amygdala
nTPM: 195.4
2830 Female, age 67, right hemisphere 277.7
2534 Female, age 94, left hemisphere 264.7
2516 Male, age 75, right hemisphere 186.1
2256 Male, age 80, left hemisphere 161.8
2255 Female, age 91, right hemisphere 148.8
1883 Male, age 76, both hemispheres 133.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 325.8
Samples: 181

Max nTPM: 1243.9
Min nTPM: 49.0
Std nTPM: 156.1
Median nTPM: 296.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1243.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 885.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 672.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 671.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 656.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 650.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 642.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 638.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 634.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 588.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 560.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 559.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 558.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 543.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 528.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 520.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 517.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 511.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 509.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 501.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 501.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 496.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 493.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 486.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 486.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 482.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 475.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 471.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 469.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 469.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 462.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 460.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 455.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 449.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 447.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 441.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 441.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 441.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 436.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 433.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 433.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 432.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 430.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 430.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 429.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 427.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 417.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 410.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 410.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 407.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 398.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 396.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 383.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 377.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 374.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 373.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 369.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 368.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 366.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 362.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 362.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 361.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 359.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 351.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 350.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 346.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 342.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 340.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 340.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 337.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 336.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 336.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 331.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 330.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 330.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 321.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 320.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 319.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 318.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 316.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 314.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 313.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 311.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 310.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 308.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 304.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 302.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 302.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 299.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 296.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 296.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 296.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 296.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 296.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 294.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 288.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 288.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 277.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 272.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 272.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 268.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 267.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 266.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 265.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 265.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 264.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 263.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 262.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 262.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 260.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 259.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 258.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 258.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 257.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 256.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 255.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 252.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 251.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 248.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 247.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 243.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 242.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 241.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 239.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 239.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 237.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 234.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 233.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 230.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 230.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 230.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 229.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 229.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 227.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 226.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 221.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 219.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 218.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 217.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 214.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 208.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 207.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 206.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 204.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 203.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 199.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 191.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 189.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 188.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 187.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 183.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 183.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 182.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 181.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 179.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 178.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 176.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 175.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 170.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 159.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 155.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 151.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 145.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 145.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 123.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 120.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 120.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 91.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 68.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 49.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

170.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 170.6
FF:10151-102I7 76 years, female 170.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.4
Pig sample Sample description nTPM
Amygdala
nTPM: 89.4
Samples: 4

Max nTPM: 117.9
Min nTPM: 72.4
Sample A Female 117.9
Sample B Female 75.2
Sample C Male 91.9
Sample D Male 72.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.2
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.0
Sample A Male 9.1
Sample B Male 9.0
Sample C Female 13.5
Sample D Female 9.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
71574362 Antisense, RP_050915_03_F02, Mouse strain C57BL/6J (56 days, male) 2.5

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