A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.7
nTPM
Monaco:
73.5
nTPM
Schmiedel:
33.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
HPA sample
nTPM
NK-cell nTPM: 29.7
Samples: 6
Max nTPM: 57.7
Min nTPM: 19.2
P10809_1013
20.0
P10809_1033
30.1
P10809_1052
21.0
P10809_1071
30.4
P10809_1093
57.7
P10809_1103
19.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.5
Monaco sample
nTPM
NK-cell nTPM: 73.5
Samples: 4
Max nTPM: 88.4
Min nTPM: 63.6
RHH5316_R3683
66.0
RHH5224_R3596
88.4
RHH5253_R3625
63.6
RHH5282_R3654
75.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.5
Schmiedel sample id
TPM
NK-cell TPM: 33.5
Samples: 90
Max TPM: 54.6
Min TPM: 10.6
NK_1
54.6
NK_2
52.2
NK_3
52.2
NK_4
50.4
NK_5
50.3
NK_6
50.2
NK_7
49.1
NK_8
48.0
NK_9
47.4
NK_10
47.3
NK_11
45.9
NK_12
45.6
NK_13
44.9
NK_14
44.8
NK_15
44.6
NK_16
44.4
NK_17
44.0
NK_18
43.8
NK_19
43.1
NK_20
42.3
NK_21
42.1
NK_22
41.5
NK_23
41.2
NK_24
41.2
NK_25
41.1
NK_26
39.1
NK_27
39.1
NK_28
39.0
NK_29
38.8
NK_30
38.4
NK_31
38.2
NK_32
38.1
NK_33
37.9
NK_34
37.7
NK_35
37.7
NK_36
37.6
NK_37
37.6
NK_38
36.6
NK_39
36.2
NK_40
35.6
NK_41
35.4
NK_42
35.4
NK_43
35.3
NK_44
35.2
NK_45
34.7
NK_46
34.6
NK_47
34.4
NK_48
33.6
NK_49
33.6
NK_50
33.5
NK_51
33.3
NK_52
32.8
NK_53
32.7
NK_54
31.9
NK_55
29.3
NK_56
29.1
NK_57
28.8
NK_58
28.8
NK_59
28.2
NK_60
28.2
NK_61
27.8
NK_62
27.7
NK_63
27.6
NK_64
27.1
NK_65
26.6
NK_66
26.2
NK_67
25.9
NK_68
25.7
NK_69
25.7
NK_70
25.6
NK_71
25.1
NK_72
24.0
NK_73
23.9
NK_74
23.6
NK_75
21.8
NK_76
21.2
NK_77
20.6
NK_78
20.0
NK_79
19.8
NK_80
19.2
NK_81
18.7
NK_82
18.7
NK_83
18.0
NK_84
17.1
NK_85
16.3
NK_86
15.9
NK_87
14.8
NK_88
14.3
NK_89
12.7
NK_90
10.6
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