A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
50.0
nTPM
Monaco:
90.2
nTPM
Schmiedel:
22.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.0
HPA sample
nTPM
Classical monocyte nTPM: 37.3
Samples: 6
Max nTPM: 46.9
Min nTPM: 26.1
P10809_1003
42.9
P10809_1020
42.5
P10809_1039
26.1
P10809_1058
29.8
P10809_1080
35.3
P10809_1107
46.9
Intermediate monocyte nTPM: 42.7
Samples: 6
Max nTPM: 56.6
Min nTPM: 23.2
P10809_1004
42.3
P10809_1023
47.5
P10809_1042
56.6
P10809_1061
23.2
P10809_1081
34.9
P10809_1108
51.5
Non-classical monocyte nTPM: 50.0
Samples: 5
Max nTPM: 60.0
Min nTPM: 35.5
P10809_1005
56.2
P10809_1053
57.1
P10809_1072
41.3
P10809_1082
35.5
P10809_1109
60.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.2
Monaco sample
nTPM
Classical monocyte nTPM: 64.6
Samples: 4
Max nTPM: 73.1
Min nTPM: 58.3
RHH5313_R3680
61.0
RHH5221_R3593
58.3
RHH5250_R3622
66.0
RHH5279_R3651
73.1
Intermediate monocyte nTPM: 84.5
Samples: 4
Max nTPM: 96.1
Min nTPM: 69.8
RHH5314_R3681
83.2
RHH5222_R3594
69.8
RHH5251_R3623
88.9
RHH5280_R3652
96.1
Non-classical monocyte nTPM: 90.2
Samples: 4
Max nTPM: 100.1
Min nTPM: 75.2
RHH5315_R3682
100.1
RHH5223_R3595
75.2
RHH5252_R3624
94.7
RHH5281_R3653
90.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
Schmiedel sample id
TPM
Classical monocyte TPM: 19.8
Samples: 91
Max TPM: 29.1
Min TPM: 10.9
MONOCYTES_1
29.1
MONOCYTES_2
28.5
MONOCYTES_3
27.7
MONOCYTES_4
27.5
MONOCYTES_5
26.2
MONOCYTES_6
25.8
MONOCYTES_7
25.6
MONOCYTES_8
25.4
MONOCYTES_9
25.3
MONOCYTES_10
25.3
MONOCYTES_11
25.1
MONOCYTES_12
25.0
MONOCYTES_13
25.0
MONOCYTES_14
24.6
MONOCYTES_15
24.5
MONOCYTES_16
24.4
MONOCYTES_17
24.3
MONOCYTES_18
24.2
MONOCYTES_19
24.1
MONOCYTES_20
24.1
MONOCYTES_21
24.0
MONOCYTES_22
24.0
MONOCYTES_23
23.3
MONOCYTES_24
23.2
MONOCYTES_25
23.2
MONOCYTES_26
23.1
MONOCYTES_27
23.0
MONOCYTES_28
23.0
MONOCYTES_29
22.6
MONOCYTES_30
22.6
MONOCYTES_31
22.5
MONOCYTES_32
22.2
MONOCYTES_33
22.2
MONOCYTES_34
22.0
MONOCYTES_35
21.9
MONOCYTES_36
21.1
MONOCYTES_37
21.0
MONOCYTES_38
20.9
MONOCYTES_39
20.8
MONOCYTES_40
20.7
MONOCYTES_41
20.7
MONOCYTES_42
20.7
MONOCYTES_43
20.2
MONOCYTES_44
20.1
MONOCYTES_45
19.9
MONOCYTES_46
19.9
MONOCYTES_47
19.7
MONOCYTES_48
19.6
MONOCYTES_49
19.6
MONOCYTES_50
19.4
MONOCYTES_51
19.3
MONOCYTES_52
19.0
MONOCYTES_53
18.6
MONOCYTES_54
18.4
MONOCYTES_55
18.4
MONOCYTES_56
18.4
MONOCYTES_57
18.3
MONOCYTES_58
18.1
MONOCYTES_59
17.9
MONOCYTES_60
17.8
MONOCYTES_61
17.8
MONOCYTES_62
17.8
MONOCYTES_63
17.3
MONOCYTES_64
17.3
MONOCYTES_65
17.2
MONOCYTES_66
17.2
MONOCYTES_67
17.1
MONOCYTES_68
17.0
MONOCYTES_69
17.0
MONOCYTES_70
16.9
MONOCYTES_71
16.8
MONOCYTES_72
16.4
MONOCYTES_73
16.3
MONOCYTES_74
15.8
MONOCYTES_75
15.8
MONOCYTES_76
15.6
MONOCYTES_77
15.6
MONOCYTES_78
15.1
MONOCYTES_79
14.6
MONOCYTES_80
13.9
MONOCYTES_81
13.9
MONOCYTES_82
13.1
MONOCYTES_83
13.0
MONOCYTES_84
12.7
MONOCYTES_85
12.3
MONOCYTES_86
11.8
MONOCYTES_87
11.7
MONOCYTES_88
11.6
MONOCYTES_89
11.1
MONOCYTES_90
11.0
MONOCYTES_91
10.9
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Non-classical monocyte TPM: 22.5
Samples: 90
Max TPM: 34.1
Min TPM: 7.2
M2_1
34.1
M2_2
33.5
M2_3
33.1
M2_4
32.4
M2_5
32.3
M2_6
32.1
M2_7
31.7
M2_8
31.7
M2_9
31.5
M2_10
31.2
M2_11
30.9
M2_12
30.3
M2_13
30.2
M2_14
30.1
M2_15
29.9
M2_16
29.9
M2_17
29.6
M2_18
29.5
M2_19
29.5
M2_20
29.4
M2_21
28.7
M2_22
28.5
M2_23
27.5
M2_24
27.4
M2_25
27.2
M2_26
27.1
M2_27
26.8
M2_28
26.7
M2_29
26.7
M2_30
26.7
M2_31
26.7
M2_32
26.6
M2_33
26.4
M2_34
26.4
M2_35
25.5
M2_36
25.3
M2_37
25.2
M2_38
25.1
M2_39
25.0
M2_40
24.8
M2_41
24.6
M2_42
24.6
M2_43
24.6
M2_44
23.9
M2_45
23.4
M2_46
23.4
M2_47
23.4
M2_48
23.3
M2_49
23.1
M2_50
23.0
M2_51
22.8
M2_52
22.4
M2_53
22.1
M2_54
21.6
M2_55
21.6
M2_56
21.6
M2_57
20.6
M2_58
20.2
M2_59
20.1
M2_60
19.8
M2_61
19.7
M2_62
19.5
M2_63
19.1
M2_64
19.1
M2_65
18.4
M2_66
17.7
M2_67
17.6
M2_68
17.5
M2_69
16.1
M2_70
15.7
M2_71
15.2
M2_72
14.9
M2_73
14.9
M2_74
14.6
M2_75
14.5
M2_76
14.0
M2_77
13.4
M2_78
13.3
M2_79
13.2
M2_80
12.8
M2_81
12.4
M2_82
12.0
M2_83
11.6
M2_84
11.2
M2_85
10.9
M2_86
10.3
M2_87
9.6
M2_88
9.5
M2_89
7.3
M2_90
7.2
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