MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.9 nTPM
HPA Brain:64.7 nTPM
GTEx:89.9 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:283.8 nTPM
Mouse:32.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.3
2019 Male, age 18, unknown 73.6
2586 Male, age 75, left hemisphere 73.3
1827 Male, age 72, unknown 56.1
2411 Female, age 72, unknown 54.3
2828 Female, age 72, unknown 51.9
1830 Male, age 51, unknown 51.6
1833 Male, age 53, unknown 51.0
1870 Female, age 42, unknown 48.4
2666 Male, age 74, left hemisphere 48.4
2219 Male, age 76, both hemispheres 44.5
Dorsal raphe nucleus
nTPM: 58.7
2047 Male, age 72, unknown 68.4
2298 Female, age 72, unknown 67.4
1828 Male, age 53, unknown 62.6
2750 Male, age 76, both hemispheres 50.4
2016 Female, age 72, unknown 44.6
Inferior colliculus
nTPM: 59.1
1890 Male, age 53, unknown 63.7
2097 Female, age 72, unknown 59.9
1848 Female, age 42, unknown 56.8
2849 Male, age 72, unknown 55.9
Median raphe nucleus
nTPM: 59.8
2220 Male, age 76, midline 59.8
Periaquaductal grey, anterior
nTPM: 54.7
1947 Male, age 18, unknown 55.1
1795 Male, age 51, unknown 54.8
2502 Female, age 75, unknown 54.2
Periaquaductal grey, dorsal
nTPM: 45.5
1840 Male, age 53, unknown 47.2
2464 Female, age 72, unknown 46.2
1831 Male, age 72, unknown 44.7
2850 Male, age 76, both hemispheres 44.1
Periaquaductal grey, lateral
nTPM: 46.4
2272 Male, age 74, both hemispheres 53.8
2053 Male, age 18, unknown 45.5
2140 Male, age 76, both hemispheres 39.8
Pretectal area
nTPM: 57.7
2007 Male, age 72, unknown 80.9
1817 Female, age 42, unknown 75.2
1944 Female, age 72, unknown 74.4
1816 Male, age 51, unknown 68.2
2667 Female, age 75, unknown 58.6
1815 Male, age 53, unknown 52.5
2224 Female, age 72, unknown 51.1
2273 Male, age 74, both hemispheres 45.7
2316 Male, age 76, right hemisphere 44.3
2825 Male, age 18, unknown 42.9
2407 Male, age 75, both hemispheres 41.0
Red nucleus
nTPM: 63.9
1821 Female, age 72, unknown 80.9
2503 Female, age 72, unknown 75.7
2785 Male, age 18, unknown 71.0
2588 Male, age 74, left hemisphere 65.6
2769 Male, age 72, unknown 63.3
1954 Female, age 42, unknown 61.8
2725 Female, age 75, unknown 61.7
2227 Male, age 72, unknown 61.5
1904 Male, age 53, unknown 60.2
1865 Male, age 51, unknown 57.3
2823 Male, age 76, right hemisphere 57.3
2584 Male, age 75, left hemisphere 50.8
Substantia nigra
nTPM: 64.7
1916 Female, age 42, unknown 98.4
1941 Male, age 53, unknown 80.2
1889 Female, age 72, unknown 69.5
1851 Male, age 51, unknown 66.3
2590 Female, age 75, unknown 60.2
2665 Male, age 74, both hemispheres 59.3
2699 Male, age 18, unknown 58.6
2583 Male, age 75, right hemisphere 57.3
2409 Female, age 72, unknown 53.1
2241 Male, age 72, unknown 43.5
Superior colliculus
nTPM: 51.1
2587 Male, age 74, left hemisphere 58.6
1796 Male, age 53, unknown 54.4
2668 Female, age 75, unknown 53.1
1839 Male, age 51, unknown 52.3
2087 Female, age 72, unknown 52.1
1895 Male, age 76, right hemisphere 50.2
2664 Male, age 75, both hemispheres 49.6
2261 Male, age 18, unknown 47.8
1995 Male, age 72, unknown 46.9
1913 Female, age 42, unknown 46.2
Ventral tegmental area
nTPM: 58.9
1915 Female, age 42, unknown 75.1
2223 Female, age 72, unknown 63.9
2218 Male, age 76, both hemispheres 60.5
2410 Female, age 72, unknown 59.4
1942 Male, age 51, unknown 51.9
2021 Male, age 53, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 89.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.9
Samples: 183

Max nTPM: 190.0
Min nTPM: 25.8
Std nTPM: 29.5
Median nTPM: 88.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 190.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 168.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 158.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 158.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 157.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 150.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 149.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 148.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 148.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 146.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 145.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 283.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 240.6
Samples: 4

Max nTPM: 350.7
Min nTPM: 190.5
Sample A Female 350.7
Sample B Female 204.2
Sample C Male 216.9
Sample D Male 190.5
Midbrain
nTPM: 255.4
Samples: 4

Max nTPM: 312.7
Min nTPM: 190.7
Sample A Female 312.7
Sample B Female 275.3
Sample C Male 243.0
Sample D Male 190.7
Periaqueductal gray
nTPM: 179.8
Samples: 3

Max nTPM: 216.1
Min nTPM: 138.4
Sample B Female 185.0
Sample C Male 216.1
Sample D Male 138.4
Superior colliculi
nTPM: 283.8
Samples: 4

Max nTPM: 334.8
Min nTPM: 234.6
Sample A Female 321.8
Sample B Female 234.6
Sample C Male 334.8
Sample D Male 243.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.4
Sample A Male 36.8
Sample B Male 30.0
Sample C Female 29.4
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70598394 Antisense, RP_050412_01_H12, Mouse strain C57BL/6J (56 days, male) 0.0

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