MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:172.0 nTPM
HPA Brain:100.9 nTPM
GTEx:172.0 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:66.5 nTPM
Mouse:108.7 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.5
2586 Male, age 75, left hemisphere 117.2
2019 Male, age 18, unknown 101.1
1827 Male, age 72, unknown 96.9
2828 Female, age 72, unknown 96.4
2411 Female, age 72, unknown 89.0
2666 Male, age 74, left hemisphere 81.9
2219 Male, age 76, both hemispheres 81.4
1833 Male, age 53, unknown 77.4
1870 Female, age 42, unknown 76.3
1830 Male, age 51, unknown 67.8
Dorsal raphe nucleus
nTPM: 92.3
2298 Female, age 72, unknown 109.6
1828 Male, age 53, unknown 97.1
2047 Male, age 72, unknown 91.0
2750 Male, age 76, both hemispheres 84.2
2016 Female, age 72, unknown 79.4
Inferior colliculus
nTPM: 85.0
2097 Female, age 72, unknown 93.8
1890 Male, age 53, unknown 90.0
1848 Female, age 42, unknown 80.3
2849 Male, age 72, unknown 75.8
Median raphe nucleus
nTPM: 83.8
2220 Male, age 76, midline 83.8
Periaquaductal grey, anterior
nTPM: 98.0
1795 Male, age 51, unknown 104.3
1947 Male, age 18, unknown 99.1
2502 Female, age 75, unknown 90.6
Periaquaductal grey, dorsal
nTPM: 77.5
2850 Male, age 76, both hemispheres 84.9
1840 Male, age 53, unknown 80.5
1831 Male, age 72, unknown 73.5
2464 Female, age 72, unknown 71.0
Periaquaductal grey, lateral
nTPM: 83.7
2272 Male, age 74, both hemispheres 95.8
2140 Male, age 76, both hemispheres 84.5
2053 Male, age 18, unknown 70.8
Pretectal area
nTPM: 96.7
2007 Male, age 72, unknown 126.6
1817 Female, age 42, unknown 113.0
1816 Male, age 51, unknown 112.4
1944 Female, age 72, unknown 103.2
2667 Female, age 75, unknown 99.8
2273 Male, age 74, both hemispheres 98.5
1815 Male, age 53, unknown 96.2
2224 Female, age 72, unknown 87.5
2316 Male, age 76, right hemisphere 80.3
2825 Male, age 18, unknown 77.8
2407 Male, age 75, both hemispheres 68.2
Red nucleus
nTPM: 93.0
1821 Female, age 72, unknown 107.4
2785 Male, age 18, unknown 106.9
2725 Female, age 75, unknown 101.0
2503 Female, age 72, unknown 100.0
2769 Male, age 72, unknown 96.9
2227 Male, age 72, unknown 92.8
1954 Female, age 42, unknown 91.5
1904 Male, age 53, unknown 90.1
1865 Male, age 51, unknown 86.9
2588 Male, age 74, left hemisphere 86.7
2823 Male, age 76, right hemisphere 81.3
2584 Male, age 75, left hemisphere 74.9
Substantia nigra
nTPM: 100.9
1916 Female, age 42, unknown 144.7
1851 Male, age 51, unknown 113.3
1889 Female, age 72, unknown 104.5
1941 Male, age 53, unknown 102.9
2699 Male, age 18, unknown 98.1
2665 Male, age 74, both hemispheres 94.0
2409 Female, age 72, unknown 93.4
2583 Male, age 75, right hemisphere 91.4
2241 Male, age 72, unknown 86.8
2590 Female, age 75, unknown 80.4
Superior colliculus
nTPM: 87.9
1796 Male, age 53, unknown 105.2
2668 Female, age 75, unknown 102.3
2087 Female, age 72, unknown 96.1
2261 Male, age 18, unknown 94.2
2587 Male, age 74, left hemisphere 82.7
2664 Male, age 75, both hemispheres 82.1
1913 Female, age 42, unknown 81.0
1839 Male, age 51, unknown 80.6
1895 Male, age 76, right hemisphere 78.1
1995 Male, age 72, unknown 76.7
Ventral tegmental area
nTPM: 92.7
1915 Female, age 42, unknown 108.4
2410 Female, age 72, unknown 101.8
2218 Male, age 76, both hemispheres 98.3
1942 Male, age 51, unknown 95.6
2223 Female, age 72, unknown 79.5
2021 Male, age 53, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 172.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.0
Samples: 183

Max nTPM: 363.6
Min nTPM: 60.9
Std nTPM: 43.6
Median nTPM: 168.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 363.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 322.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 287.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 284.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 284.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 266.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 256.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 255.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 255.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 250.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 247.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.8
Samples: 4

Max nTPM: 75.5
Min nTPM: 43.5
Sample A Female 75.5
Sample B Female 51.5
Sample C Male 60.7
Sample D Male 43.5
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 75.1
Min nTPM: 46.9
Sample A Female 75.1
Sample B Female 46.9
Sample C Male 68.4
Sample D Male 58.4
Periaqueductal gray
nTPM: 46.6
Samples: 3

Max nTPM: 54.9
Min nTPM: 41.5
Sample B Female 43.5
Sample C Male 54.9
Sample D Male 41.5
Superior colliculi
nTPM: 66.5
Samples: 4

Max nTPM: 84.9
Min nTPM: 55.8
Sample A Female 84.9
Sample B Female 56.8
Sample C Male 68.4
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 108.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.7
Samples: 4

Max nTPM: 119.9
Min nTPM: 100.3
Sample A Male 119.9
Sample B Male 104.2
Sample C Female 100.3
Sample D Female 110.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
576434 Antisense, RP_040826_01_H10, Mouse strain C57BL/6J (56 days, male) 18.0
81599658 Antisense, RP_071213_04_B03, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo