MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:13.6 nTPM
GTEx:12.3 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:38.0 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
1827 Male, age 72, unknown 8.4
2019 Male, age 18, unknown 8.1
2411 Female, age 72, unknown 7.4
1870 Female, age 42, unknown 7.2
1830 Male, age 51, unknown 7.1
1833 Male, age 53, unknown 7.0
2828 Female, age 72, unknown 6.9
2219 Male, age 76, both hemispheres 6.7
2666 Male, age 74, left hemisphere 5.4
2586 Male, age 75, left hemisphere 4.9
Dorsal raphe nucleus
nTPM: 9.7
2298 Female, age 72, unknown 13.9
2016 Female, age 72, unknown 10.7
1828 Male, age 53, unknown 8.7
2047 Male, age 72, unknown 7.9
2750 Male, age 76, both hemispheres 7.5
Inferior colliculus
nTPM: 7.0
2097 Female, age 72, unknown 7.8
1890 Male, age 53, unknown 7.5
2849 Male, age 72, unknown 6.7
1848 Female, age 42, unknown 5.8
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Periaquaductal grey, anterior
nTPM: 10.0
1795 Male, age 51, unknown 10.6
1947 Male, age 18, unknown 10.3
2502 Female, age 75, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 9.8
2850 Male, age 76, both hemispheres 14.2
1840 Male, age 53, unknown 9.7
1831 Male, age 72, unknown 7.6
2464 Female, age 72, unknown 7.6
Periaquaductal grey, lateral
nTPM: 13.6
2272 Male, age 74, both hemispheres 21.1
2140 Male, age 76, both hemispheres 12.3
2053 Male, age 18, unknown 7.4
Pretectal area
nTPM: 8.8
2273 Male, age 74, both hemispheres 18.2
2224 Female, age 72, unknown 10.6
2667 Female, age 75, unknown 8.7
1816 Male, age 51, unknown 8.3
2007 Male, age 72, unknown 8.3
1817 Female, age 42, unknown 8.0
2825 Male, age 18, unknown 7.8
1944 Female, age 72, unknown 7.4
2316 Male, age 76, right hemisphere 7.4
1815 Male, age 53, unknown 6.6
2407 Male, age 75, both hemispheres 5.2
Red nucleus
nTPM: 7.2
2725 Female, age 75, unknown 9.7
2785 Male, age 18, unknown 8.5
1865 Male, age 51, unknown 8.1
2227 Male, age 72, unknown 7.7
2769 Male, age 72, unknown 7.2
1821 Female, age 72, unknown 7.1
1954 Female, age 42, unknown 7.1
2588 Male, age 74, left hemisphere 6.9
2823 Male, age 76, right hemisphere 6.9
1904 Male, age 53, unknown 6.8
2503 Female, age 72, unknown 6.2
2584 Male, age 75, left hemisphere 4.7
Substantia nigra
nTPM: 7.1
1941 Male, age 53, unknown 8.1
1916 Female, age 42, unknown 7.7
2583 Male, age 75, right hemisphere 7.7
2241 Male, age 72, unknown 7.1
1851 Male, age 51, unknown 7.0
2590 Female, age 75, unknown 6.9
2699 Male, age 18, unknown 6.9
1889 Female, age 72, unknown 6.7
2409 Female, age 72, unknown 6.5
2665 Male, age 74, both hemispheres 6.5
Superior colliculus
nTPM: 7.0
2587 Male, age 74, left hemisphere 9.0
2261 Male, age 18, unknown 8.8
1995 Male, age 72, unknown 8.1
1796 Male, age 53, unknown 7.4
2087 Female, age 72, unknown 7.3
1895 Male, age 76, right hemisphere 6.7
1913 Female, age 42, unknown 6.6
1839 Male, age 51, unknown 5.8
2668 Female, age 75, unknown 5.6
2664 Male, age 75, both hemispheres 4.7
Ventral tegmental area
nTPM: 6.9
1915 Female, age 42, unknown 7.5
2218 Male, age 76, both hemispheres 7.4
2021 Male, age 53, unknown 7.3
1942 Male, age 51, unknown 6.7
2223 Female, age 72, unknown 6.5
2410 Female, age 72, unknown 6.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 183

Max nTPM: 30.8
Min nTPM: 6.7
Std nTPM: 3.3
Median nTPM: 11.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 30.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 29.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 26.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 19.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 19.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 18.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 17.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 41.8
Min nTPM: 29.1
Sample A Female 40.1
Sample B Female 29.1
Sample C Male 41.8
Sample D Male 30.1
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 45.4
Min nTPM: 34.5
Sample A Female 41.8
Sample B Female 34.5
Sample C Male 45.4
Sample D Male 44.3
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 40.5
Min nTPM: 33.2
Sample B Female 35.1
Sample C Male 40.5
Sample D Male 33.2
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 50.4
Min nTPM: 33.8
Sample A Female 50.4
Sample B Female 33.8
Sample C Male 45.9
Sample D Male 41.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 39.5
Min nTPM: 36.9
Sample A Male 38.2
Sample B Male 36.9
Sample C Female 39.5
Sample D Female 37.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70429405 Antisense, RP_050614_01_F02, Mouse strain C57BL/6J (56 days, male) 0.9

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