MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:20.2 nTPM
GTEx:8.4 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:12.1 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2019 Male, age 18, unknown 26.2
2828 Female, age 72, unknown 21.0
2586 Male, age 75, left hemisphere 17.8
1827 Male, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 14.6
2219 Male, age 76, both hemispheres 13.8
1830 Male, age 51, unknown 13.6
2411 Female, age 72, unknown 13.5
1833 Male, age 53, unknown 13.2
1870 Female, age 42, unknown 12.9
Dorsal raphe nucleus
nTPM: 14.7
2298 Female, age 72, unknown 16.8
2016 Female, age 72, unknown 16.1
1828 Male, age 53, unknown 15.3
2047 Male, age 72, unknown 12.6
2750 Male, age 76, both hemispheres 12.4
Inferior colliculus
nTPM: 15.3
2097 Female, age 72, unknown 17.4
1890 Male, age 53, unknown 16.7
1848 Female, age 42, unknown 14.6
2849 Male, age 72, unknown 12.5
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Periaquaductal grey, anterior
nTPM: 17.5
2502 Female, age 75, unknown 21.5
1795 Male, age 51, unknown 18.9
1947 Male, age 18, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 15.7
2464 Female, age 72, unknown 17.0
1831 Male, age 72, unknown 15.9
1840 Male, age 53, unknown 15.0
2850 Male, age 76, both hemispheres 14.9
Periaquaductal grey, lateral
nTPM: 17.1
2272 Male, age 74, both hemispheres 19.1
2140 Male, age 76, both hemispheres 18.7
2053 Male, age 18, unknown 13.4
Pretectal area
nTPM: 20.2
2007 Male, age 72, unknown 27.0
1816 Male, age 51, unknown 25.9
1817 Female, age 42, unknown 25.6
1944 Female, age 72, unknown 25.6
1815 Male, age 53, unknown 22.4
2273 Male, age 74, both hemispheres 21.4
2667 Female, age 75, unknown 17.3
2407 Male, age 75, both hemispheres 16.2
2224 Female, age 72, unknown 15.1
2316 Male, age 76, right hemisphere 13.4
2825 Male, age 18, unknown 12.1
Red nucleus
nTPM: 16.9
2785 Male, age 18, unknown 26.2
1954 Female, age 42, unknown 17.6
2503 Female, age 72, unknown 17.4
2227 Male, age 72, unknown 17.3
1904 Male, age 53, unknown 17.2
1865 Male, age 51, unknown 16.2
2584 Male, age 75, left hemisphere 16.1
2769 Male, age 72, unknown 15.7
2588 Male, age 74, left hemisphere 15.5
2823 Male, age 76, right hemisphere 14.7
1821 Female, age 72, unknown 14.6
2725 Female, age 75, unknown 13.9
Substantia nigra
nTPM: 14.2
1889 Female, age 72, unknown 19.8
2665 Male, age 74, both hemispheres 17.7
2583 Male, age 75, right hemisphere 15.7
2590 Female, age 75, unknown 15.7
1916 Female, age 42, unknown 13.4
2699 Male, age 18, unknown 12.8
1941 Male, age 53, unknown 12.7
1851 Male, age 51, unknown 12.6
2241 Male, age 72, unknown 10.9
2409 Female, age 72, unknown 10.8
Superior colliculus
nTPM: 18.3
2087 Female, age 72, unknown 25.1
2664 Male, age 75, both hemispheres 23.4
1995 Male, age 72, unknown 21.9
2261 Male, age 18, unknown 20.6
1913 Female, age 42, unknown 17.9
1796 Male, age 53, unknown 17.1
2668 Female, age 75, unknown 17.0
1839 Male, age 51, unknown 14.8
2587 Male, age 74, left hemisphere 14.5
1895 Male, age 76, right hemisphere 10.7
Ventral tegmental area
nTPM: 13.6
1942 Male, age 51, unknown 14.6
2021 Male, age 53, unknown 14.3
2410 Female, age 72, unknown 14.1
2218 Male, age 76, both hemispheres 13.2
1915 Female, age 42, unknown 13.0
2223 Female, age 72, unknown 12.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 183

Max nTPM: 22.3
Min nTPM: 3.2
Std nTPM: 2.9
Median nTPM: 8.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 22.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 16.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 16.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 15.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 15.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 14.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 13.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.9
Sample A Female 9.4
Sample B Female 11.1
Sample C Male 7.9
Sample D Male 8.3
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.4
Sample A Female 11.6
Sample B Female 8.3
Sample C Male 8.1
Sample D Male 6.4
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.4
Sample B Female 8.4
Sample C Male 10.0
Sample D Male 9.1
Superior colliculi
nTPM: 9.5
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.3
Sample A Female 10.2
Sample B Female 12.7
Sample C Male 7.3
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 12.8
Min nTPM: 11.4
Sample A Male 12.8
Sample B Male 11.8
Sample C Female 11.4
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70593113 Antisense, RP_050329_02_C03, Mouse strain C57BL/6J (56 days, male) 0.3

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