MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.1 nTPM
HPA Brain:22.8 nTPM
GTEx:58.1 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:140.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
2019 Male, age 18, unknown 24.9
2411 Female, age 72, unknown 23.6
1870 Female, age 42, unknown 22.3
1833 Male, age 53, unknown 22.0
1830 Male, age 51, unknown 21.0
1827 Male, age 72, unknown 19.9
2586 Male, age 75, left hemisphere 18.7
2219 Male, age 76, both hemispheres 16.2
2828 Female, age 72, unknown 16.0
2666 Male, age 74, left hemisphere 13.4
Dorsal raphe nucleus
nTPM: 20.6
2750 Male, age 76, both hemispheres 22.2
2298 Female, age 72, unknown 22.0
2016 Female, age 72, unknown 20.6
1828 Male, age 53, unknown 20.1
2047 Male, age 72, unknown 17.9
Inferior colliculus
nTPM: 21.4
2097 Female, age 72, unknown 28.3
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 18.4
1890 Male, age 53, unknown 17.9
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 22.8
2502 Female, age 75, unknown 24.2
1947 Male, age 18, unknown 23.1
1795 Male, age 51, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 20.4
2850 Male, age 76, both hemispheres 22.8
1840 Male, age 53, unknown 22.0
2464 Female, age 72, unknown 19.9
1831 Male, age 72, unknown 17.0
Periaquaductal grey, lateral
nTPM: 21.2
2272 Male, age 74, both hemispheres 27.1
2053 Male, age 18, unknown 18.8
2140 Male, age 76, both hemispheres 17.5
Pretectal area
nTPM: 20.0
2273 Male, age 74, both hemispheres 25.7
2224 Female, age 72, unknown 23.6
1817 Female, age 42, unknown 22.7
1944 Female, age 72, unknown 22.5
2007 Male, age 72, unknown 21.3
1815 Male, age 53, unknown 20.0
1816 Male, age 51, unknown 20.0
2667 Female, age 75, unknown 17.9
2825 Male, age 18, unknown 17.1
2316 Male, age 76, right hemisphere 15.0
2407 Male, age 75, both hemispheres 14.8
Red nucleus
nTPM: 21.4
1821 Female, age 72, unknown 27.9
1954 Female, age 42, unknown 24.6
2725 Female, age 75, unknown 23.0
1865 Male, age 51, unknown 22.2
2769 Male, age 72, unknown 21.7
1904 Male, age 53, unknown 21.5
2503 Female, age 72, unknown 21.0
2823 Male, age 76, right hemisphere 20.3
2785 Male, age 18, unknown 20.2
2227 Male, age 72, unknown 19.7
2584 Male, age 75, left hemisphere 18.7
2588 Male, age 74, left hemisphere 16.4
Substantia nigra
nTPM: 21.4
2241 Male, age 72, unknown 32.0
2409 Female, age 72, unknown 23.7
1889 Female, age 72, unknown 22.9
1851 Male, age 51, unknown 22.0
1916 Female, age 42, unknown 21.8
1941 Male, age 53, unknown 21.4
2699 Male, age 18, unknown 19.5
2590 Female, age 75, unknown 17.5
2665 Male, age 74, both hemispheres 17.5
2583 Male, age 75, right hemisphere 16.0
Superior colliculus
nTPM: 20.4
2587 Male, age 74, left hemisphere 23.5
2668 Female, age 75, unknown 23.3
2261 Male, age 18, unknown 22.6
1796 Male, age 53, unknown 20.6
2087 Female, age 72, unknown 20.5
1913 Female, age 42, unknown 20.1
1895 Male, age 76, right hemisphere 19.8
1995 Male, age 72, unknown 19.8
1839 Male, age 51, unknown 19.1
2664 Male, age 75, both hemispheres 14.3
Ventral tegmental area
nTPM: 20.5
1915 Female, age 42, unknown 22.5
2410 Female, age 72, unknown 21.6
2223 Female, age 72, unknown 20.3
2218 Male, age 76, both hemispheres 20.2
1942 Male, age 51, unknown 19.6
2021 Male, age 53, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.1
Samples: 183

Max nTPM: 115.7
Min nTPM: 31.5
Std nTPM: 14.4
Median nTPM: 55.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 105.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 96.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 93.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 85.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 83.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 82.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.5
Samples: 4

Max nTPM: 79.7
Min nTPM: 43.0
Sample A Female 79.7
Sample B Female 50.6
Sample C Male 56.7
Sample D Male 43.0
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 67.5
Min nTPM: 57.5
Sample A Female 67.5
Sample B Female 61.6
Sample C Male 57.5
Sample D Male 58.4
Periaqueductal gray
nTPM: 48.9
Samples: 3

Max nTPM: 53.1
Min nTPM: 40.7
Sample B Female 40.7
Sample C Male 52.9
Sample D Male 53.1
Superior colliculi
nTPM: 58.1
Samples: 4

Max nTPM: 74.9
Min nTPM: 38.6
Sample A Female 74.9
Sample B Female 38.6
Sample C Male 60.9
Sample D Male 58.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 140.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.7
Samples: 4

Max nTPM: 154.7
Min nTPM: 132.9
Sample A Male 154.7
Sample B Male 138.8
Sample C Female 132.9
Sample D Female 136.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70609184 Antisense, RP_050412_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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