A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.7
nTPM
Monaco:
11.4
nTPM
Schmiedel:
37.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
HPA sample
nTPM
Memory B-cell nTPM: 3.9
Samples: 6
Max nTPM: 6.1
Min nTPM: 1.8
P10809_1017
2.6
P10809_1025
4.6
P10809_1044
4.9
P10809_1063
6.1
P10809_1092
3.1
P10809_1105
1.8
Naive B-cell nTPM: 5.7
Samples: 6
Max nTPM: 20.5
Min nTPM: 2.0
P10809_1011
2.5
P10809_1029
2.6
P10809_1048
20.5
P10809_1067
2.0
P10809_1091
3.2
P10809_1104
3.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 10.5
Samples: 4
Max nTPM: 14.1
Min nTPM: 7.6
RHH5310_R3677
8.5
RHH5218_R3590
7.6
RHH5247_R3619
11.6
RHH5276_R3648
14.1
Naive B-cell nTPM: 11.4
Samples: 4
Max nTPM: 14.8
Min nTPM: 8.8
RHH5308_R3675
8.8
RHH5216_R3588
10.4
RHH5245_R3617
11.6
RHH5274_R3646
14.8
Non-switched memory B-cell nTPM: 9.4
Samples: 4
Max nTPM: 10.8
Min nTPM: 8.4
RHH5309_R3676
8.6
RHH5217_R3589
10.8
RHH5246_R3618
9.6
RHH5275_R3647
8.4
Plasmablast nTPM: 8.4
Samples: 4
Max nTPM: 10.4
Min nTPM: 5.2
RHH5312_R3679
5.2
RHH5220_R3592
10.4
RHH5249_R3621
9.3
RHH5278_R3650
8.7
Switched memory B-cell nTPM: 10.9
Samples: 4
Max nTPM: 17.3
Min nTPM: 3.8
RHH5311_R3678
3.8
RHH5219_R3591
17.3
RHH5248_R3620
10.5
RHH5277_R3649
12.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.2
Schmiedel sample id
TPM
Naive B-cell TPM: 37.2
Samples: 91
Max TPM: 47.6
Min TPM: 27.4
B_CELL_NAIVE_1
47.6
B_CELL_NAIVE_2
45.8
B_CELL_NAIVE_3
45.7
B_CELL_NAIVE_4
45.3
B_CELL_NAIVE_5
44.8
B_CELL_NAIVE_6
44.7
B_CELL_NAIVE_7
43.4
B_CELL_NAIVE_8
42.9
B_CELL_NAIVE_9
42.9
B_CELL_NAIVE_10
42.5
B_CELL_NAIVE_11
42.3
B_CELL_NAIVE_12
42.2
B_CELL_NAIVE_13
42.1
B_CELL_NAIVE_14
42.1
B_CELL_NAIVE_15
42.0
B_CELL_NAIVE_16
41.6
B_CELL_NAIVE_17
41.3
B_CELL_NAIVE_18
41.0
B_CELL_NAIVE_19
40.8
B_CELL_NAIVE_20
40.8
B_CELL_NAIVE_21
40.3
B_CELL_NAIVE_22
40.2
B_CELL_NAIVE_23
40.2
B_CELL_NAIVE_24
39.8
B_CELL_NAIVE_25
39.4
B_CELL_NAIVE_26
39.4
B_CELL_NAIVE_27
39.3
B_CELL_NAIVE_28
39.3
B_CELL_NAIVE_29
39.1
B_CELL_NAIVE_30
39.1
B_CELL_NAIVE_31
38.9
B_CELL_NAIVE_32
38.9
B_CELL_NAIVE_33
38.6
B_CELL_NAIVE_34
38.5
B_CELL_NAIVE_35
38.4
B_CELL_NAIVE_36
38.3
B_CELL_NAIVE_37
38.2
B_CELL_NAIVE_38
37.4
B_CELL_NAIVE_39
37.3
B_CELL_NAIVE_40
37.3
B_CELL_NAIVE_41
37.3
B_CELL_NAIVE_42
37.0
B_CELL_NAIVE_43
37.0
B_CELL_NAIVE_44
36.8
B_CELL_NAIVE_45
36.8
B_CELL_NAIVE_46
36.7
B_CELL_NAIVE_47
36.5
B_CELL_NAIVE_48
36.4
B_CELL_NAIVE_49
36.3
B_CELL_NAIVE_50
36.2
B_CELL_NAIVE_51
36.1
B_CELL_NAIVE_52
36.1
B_CELL_NAIVE_53
36.0
B_CELL_NAIVE_54
36.0
B_CELL_NAIVE_55
35.9
B_CELL_NAIVE_56
35.9
B_CELL_NAIVE_57
35.6
B_CELL_NAIVE_58
35.6
B_CELL_NAIVE_59
35.4
B_CELL_NAIVE_60
35.3
B_CELL_NAIVE_61
35.2
B_CELL_NAIVE_62
35.1
B_CELL_NAIVE_63
34.9
B_CELL_NAIVE_64
34.7
B_CELL_NAIVE_65
34.6
B_CELL_NAIVE_66
34.6
B_CELL_NAIVE_67
34.6
B_CELL_NAIVE_68
34.6
B_CELL_NAIVE_69
34.4
B_CELL_NAIVE_70
34.3
B_CELL_NAIVE_71
34.3
B_CELL_NAIVE_72
34.2
B_CELL_NAIVE_73
34.1
B_CELL_NAIVE_74
34.1
B_CELL_NAIVE_75
34.0
B_CELL_NAIVE_76
33.6
B_CELL_NAIVE_77
33.3
B_CELL_NAIVE_78
33.3
B_CELL_NAIVE_79
33.1
B_CELL_NAIVE_80
32.6
B_CELL_NAIVE_81
32.5
B_CELL_NAIVE_82
32.5
B_CELL_NAIVE_83
32.2
B_CELL_NAIVE_84
31.9
B_CELL_NAIVE_85
31.4
B_CELL_NAIVE_86
31.3
B_CELL_NAIVE_87
31.2
B_CELL_NAIVE_88
30.6
B_CELL_NAIVE_89
30.0
B_CELL_NAIVE_90
29.8
B_CELL_NAIVE_91
27.4
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The Human Protein Atlas project is funded
