A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
13.7
nTPM
Schmiedel:
40.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
Classical monocyte nTPM: 4.8
Samples: 6
Max nTPM: 8.0
Min nTPM: 2.6
P10809_1003
2.6
P10809_1020
8.0
P10809_1039
6.6
P10809_1058
4.0
P10809_1080
3.5
P10809_1107
4.0
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 7.4
Min nTPM: 3.5
P10809_1004
4.8
P10809_1023
3.5
P10809_1042
5.5
P10809_1061
7.4
P10809_1081
4.9
P10809_1108
4.7
Non-classical monocyte nTPM: 7.2
Samples: 5
Max nTPM: 19.2
Min nTPM: 2.8
P10809_1005
2.8
P10809_1053
4.6
P10809_1072
19.2
P10809_1082
3.6
P10809_1109
5.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Monaco sample
nTPM
Classical monocyte nTPM: 13.7
Samples: 4
Max nTPM: 20.1
Min nTPM: 10.4
RHH5313_R3680
12.8
RHH5221_R3593
20.1
RHH5250_R3622
10.4
RHH5279_R3651
11.4
Intermediate monocyte nTPM: 9.7
Samples: 4
Max nTPM: 12.1
Min nTPM: 6.4
RHH5314_R3681
10.0
RHH5222_R3594
12.1
RHH5251_R3623
10.3
RHH5280_R3652
6.4
Non-classical monocyte nTPM: 10.6
Samples: 4
Max nTPM: 11.6
Min nTPM: 8.3
RHH5315_R3682
11.6
RHH5223_R3595
11.5
RHH5252_R3624
11.2
RHH5281_R3653
8.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
Schmiedel sample id
TPM
Classical monocyte TPM: 33.3
Samples: 91
Max TPM: 45.4
Min TPM: 23.4
MONOCYTES_1
45.4
MONOCYTES_2
43.4
MONOCYTES_3
40.7
MONOCYTES_4
40.4
MONOCYTES_5
40.0
MONOCYTES_6
39.9
MONOCYTES_7
38.9
MONOCYTES_8
38.9
MONOCYTES_9
38.7
MONOCYTES_10
38.3
MONOCYTES_11
38.1
MONOCYTES_12
37.9
MONOCYTES_13
37.6
MONOCYTES_14
37.4
MONOCYTES_15
37.2
MONOCYTES_16
36.9
MONOCYTES_17
36.9
MONOCYTES_18
36.8
MONOCYTES_19
36.7
MONOCYTES_20
36.6
MONOCYTES_21
36.4
MONOCYTES_22
36.2
MONOCYTES_23
36.2
MONOCYTES_24
36.0
MONOCYTES_25
36.0
MONOCYTES_26
35.9
MONOCYTES_27
35.9
MONOCYTES_28
35.9
MONOCYTES_29
35.5
MONOCYTES_30
35.3
MONOCYTES_31
35.2
MONOCYTES_32
35.1
MONOCYTES_33
34.8
MONOCYTES_34
34.7
MONOCYTES_35
34.6
MONOCYTES_36
34.6
MONOCYTES_37
34.5
MONOCYTES_38
34.5
MONOCYTES_39
34.3
MONOCYTES_40
34.1
MONOCYTES_41
34.1
MONOCYTES_42
34.0
MONOCYTES_43
34.0
MONOCYTES_44
33.6
MONOCYTES_45
33.6
MONOCYTES_46
33.4
MONOCYTES_47
33.2
MONOCYTES_48
33.1
MONOCYTES_49
32.9
MONOCYTES_50
32.8
MONOCYTES_51
32.7
MONOCYTES_52
32.6
MONOCYTES_53
32.1
MONOCYTES_54
32.1
MONOCYTES_55
32.1
MONOCYTES_56
32.0
MONOCYTES_57
31.8
MONOCYTES_58
31.7
MONOCYTES_59
31.7
MONOCYTES_60
31.6
MONOCYTES_61
31.5
MONOCYTES_62
31.1
MONOCYTES_63
31.0
MONOCYTES_64
31.0
MONOCYTES_65
31.0
MONOCYTES_66
31.0
MONOCYTES_67
30.9
MONOCYTES_68
30.6
MONOCYTES_69
30.3
MONOCYTES_70
30.0
MONOCYTES_71
29.7
MONOCYTES_72
29.7
MONOCYTES_73
29.6
MONOCYTES_74
29.6
MONOCYTES_75
29.6
MONOCYTES_76
29.4
MONOCYTES_77
29.3
MONOCYTES_78
29.3
MONOCYTES_79
28.6
MONOCYTES_80
28.4
MONOCYTES_81
28.3
MONOCYTES_82
28.3
MONOCYTES_83
28.1
MONOCYTES_84
27.5
MONOCYTES_85
27.0
MONOCYTES_86
26.9
MONOCYTES_87
26.6
MONOCYTES_88
26.5
MONOCYTES_89
25.8
MONOCYTES_90
25.6
MONOCYTES_91
23.4
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Non-classical monocyte TPM: 40.3
Samples: 90
Max TPM: 53.3
Min TPM: 31.5
M2_1
53.3
M2_2
51.8
M2_3
49.0
M2_4
48.1
M2_5
47.9
M2_6
47.2
M2_7
47.2
M2_8
46.3
M2_9
45.9
M2_10
45.7
M2_11
45.4
M2_12
45.1
M2_13
45.0
M2_14
44.8
M2_15
44.8
M2_16
44.8
M2_17
44.6
M2_18
44.4
M2_19
44.2
M2_20
44.2
M2_21
44.2
M2_22
43.8
M2_23
43.4
M2_24
43.4
M2_25
43.3
M2_26
43.2
M2_27
42.7
M2_28
42.7
M2_29
42.4
M2_30
42.4
M2_31
42.1
M2_32
42.0
M2_33
41.7
M2_34
41.6
M2_35
41.5
M2_36
41.4
M2_37
41.2
M2_38
41.2
M2_39
41.2
M2_40
41.1
M2_41
40.4
M2_42
40.3
M2_43
40.0
M2_44
39.8
M2_45
39.6
M2_46
39.3
M2_47
39.3
M2_48
39.3
M2_49
39.2
M2_50
39.1
M2_51
39.0
M2_52
39.0
M2_53
38.8
M2_54
38.7
M2_55
38.6
M2_56
38.6
M2_57
38.5
M2_58
38.5
M2_59
38.1
M2_60
37.9
M2_61
37.8
M2_62
37.8
M2_63
37.5
M2_64
37.4
M2_65
37.4
M2_66
37.1
M2_67
37.0
M2_68
36.6
M2_69
36.6
M2_70
36.2
M2_71
36.2
M2_72
36.1
M2_73
36.0
M2_74
35.9
M2_75
35.7
M2_76
35.7
M2_77
35.5
M2_78
35.5
M2_79
35.4
M2_80
35.1
M2_81
35.1
M2_82
34.7
M2_83
34.4
M2_84
34.1
M2_85
34.1
M2_86
33.9
M2_87
33.8
M2_88
33.4
M2_89
33.2
M2_90
31.5
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