MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA Brain:288.4 nTPM
GTEx:46.5 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:100.2 nTPM
Mouse:98.8 nTPM
Allen mouse:15.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 288.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 144.2
2219 Male, age 76, both hemispheres 187.7
1827 Male, age 72, unknown 182.6
2828 Female, age 72, unknown 157.9
2019 Male, age 18, unknown 155.6
2586 Male, age 75, left hemisphere 145.6
2666 Male, age 74, left hemisphere 132.5
1833 Male, age 53, unknown 130.1
2411 Female, age 72, unknown 125.3
1830 Male, age 51, unknown 114.6
1870 Female, age 42, unknown 110.1
Dorsal raphe nucleus
nTPM: 116.3
2298 Female, age 72, unknown 137.2
2047 Male, age 72, unknown 124.5
1828 Male, age 53, unknown 116.9
2750 Male, age 76, both hemispheres 114.7
2016 Female, age 72, unknown 88.1
Inferior colliculus
nTPM: 171.0
2097 Female, age 72, unknown 183.4
1848 Female, age 42, unknown 177.3
2849 Male, age 72, unknown 175.1
1890 Male, age 53, unknown 148.4
Median raphe nucleus
nTPM: 148.4
2220 Male, age 76, midline 148.4
Periaquaductal grey, anterior
nTPM: 288.4
2502 Female, age 75, unknown 517.1
1795 Male, age 51, unknown 178.9
1947 Male, age 18, unknown 169.3
Periaquaductal grey, dorsal
nTPM: 133.6
1840 Male, age 53, unknown 154.8
2464 Female, age 72, unknown 143.5
2850 Male, age 76, both hemispheres 121.5
1831 Male, age 72, unknown 114.7
Periaquaductal grey, lateral
nTPM: 117.1
2140 Male, age 76, both hemispheres 145.7
2053 Male, age 18, unknown 119.7
2272 Male, age 74, both hemispheres 85.9
Pretectal area
nTPM: 199.4
2667 Female, age 75, unknown 381.1
1816 Male, age 51, unknown 293.4
2007 Male, age 72, unknown 249.2
1944 Female, age 72, unknown 240.0
1817 Female, age 42, unknown 227.8
1815 Male, age 53, unknown 186.0
2316 Male, age 76, right hemisphere 144.2
2224 Female, age 72, unknown 141.3
2825 Male, age 18, unknown 130.6
2407 Male, age 75, both hemispheres 128.7
2273 Male, age 74, both hemispheres 71.0
Red nucleus
nTPM: 108.0
2785 Male, age 18, unknown 162.3
2588 Male, age 74, left hemisphere 116.2
2823 Male, age 76, right hemisphere 115.5
2584 Male, age 75, left hemisphere 110.9
2769 Male, age 72, unknown 108.9
1821 Female, age 72, unknown 108.4
2227 Male, age 72, unknown 105.9
1954 Female, age 42, unknown 104.9
2503 Female, age 72, unknown 104.2
1865 Male, age 51, unknown 93.2
1904 Male, age 53, unknown 93.2
2725 Female, age 75, unknown 72.7
Substantia nigra
nTPM: 137.8
2665 Male, age 74, both hemispheres 231.8
1889 Female, age 72, unknown 195.7
1916 Female, age 42, unknown 187.5
1941 Male, age 53, unknown 166.7
1851 Male, age 51, unknown 150.9
2699 Male, age 18, unknown 115.9
2241 Male, age 72, unknown 109.1
2409 Female, age 72, unknown 103.1
2590 Female, age 75, unknown 80.9
2583 Male, age 75, right hemisphere 36.3
Superior colliculus
nTPM: 165.9
2664 Male, age 75, both hemispheres 258.1
1895 Male, age 76, right hemisphere 221.6
2087 Female, age 72, unknown 212.9
2261 Male, age 18, unknown 195.1
1796 Male, age 53, unknown 186.8
2587 Male, age 74, left hemisphere 149.5
1839 Male, age 51, unknown 148.9
1913 Female, age 42, unknown 105.5
1995 Male, age 72, unknown 101.8
2668 Female, age 75, unknown 79.4
Ventral tegmental area
nTPM: 134.8
2218 Male, age 76, both hemispheres 180.9
2410 Female, age 72, unknown 146.5
1915 Female, age 42, unknown 146.1
1942 Male, age 51, unknown 137.8
2223 Female, age 72, unknown 101.8
2021 Male, age 53, unknown 95.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 183

Max nTPM: 217.6
Min nTPM: 0.3
Std nTPM: 41.7
Median nTPM: 33.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 217.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 189.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 159.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 156.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 151.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 137.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 130.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 117.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 116.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 115.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 100.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 95.6
Min nTPM: 18.6
Sample A Female 94.3
Sample B Female 43.5
Sample C Male 95.6
Sample D Male 18.6
Midbrain
nTPM: 96.5
Samples: 4

Max nTPM: 193.2
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 48.2
Sample C Male 193.2
Sample D Male 128.1
Periaqueductal gray
nTPM: 63.5
Samples: 3

Max nTPM: 86.1
Min nTPM: 51.1
Sample B Female 51.1
Sample C Male 86.1
Sample D Male 53.3
Superior colliculi
nTPM: 100.2
Samples: 4

Max nTPM: 137.9
Min nTPM: 38.5
Sample A Female 107.1
Sample B Female 38.5
Sample C Male 137.9
Sample D Male 117.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 98.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.8
Samples: 4

Max nTPM: 108.8
Min nTPM: 90.6
Sample A Male 90.6
Sample B Male 95.8
Sample C Female 108.8
Sample D Female 99.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.6
79556694 Antisense, RP_071204_01_C09, Mouse strain C57BL/6J (56 days, male) 18.9
79632316 Antisense, RP_071204_01_C09, Mouse strain C57BL/6J (56 days, male) 18.9
1585 Antisense, RP_040526_01_F03, Mouse strain C57BL/6J (56 days, male) 12.3
1586 Antisense, RP_040526_01_F03, Mouse strain C57BL/6J (56 days, male) 8.9

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