MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.3 nTPM
HPA Brain:57.6 nTPM
GTEx:59.3 nTPM
FANTOM5:92.5 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:14.5 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
2586 Male, age 75, left hemisphere 56.3
2828 Female, age 72, unknown 51.6
2411 Female, age 72, unknown 48.9
1827 Male, age 72, unknown 48.1
2666 Male, age 74, left hemisphere 46.6
1833 Male, age 53, unknown 46.4
1870 Female, age 42, unknown 43.4
2219 Male, age 76, both hemispheres 41.8
1830 Male, age 51, unknown 41.2
2019 Male, age 18, unknown 39.4
Dorsal raphe nucleus
nTPM: 52.5
2298 Female, age 72, unknown 70.6
2016 Female, age 72, unknown 50.9
2047 Male, age 72, unknown 48.8
1828 Male, age 53, unknown 46.7
2750 Male, age 76, both hemispheres 45.4
Inferior colliculus
nTPM: 49.0
2097 Female, age 72, unknown 52.0
2849 Male, age 72, unknown 51.3
1848 Female, age 42, unknown 47.1
1890 Male, age 53, unknown 45.7
Median raphe nucleus
nTPM: 51.5
2220 Male, age 76, midline 51.5
Periaquaductal grey, anterior
nTPM: 57.6
1795 Male, age 51, unknown 61.0
2502 Female, age 75, unknown 56.7
1947 Male, age 18, unknown 55.0
Periaquaductal grey, dorsal
nTPM: 50.9
2850 Male, age 76, both hemispheres 56.1
1840 Male, age 53, unknown 54.9
1831 Male, age 72, unknown 48.7
2464 Female, age 72, unknown 43.8
Periaquaductal grey, lateral
nTPM: 51.4
2272 Male, age 74, both hemispheres 59.5
2140 Male, age 76, both hemispheres 49.8
2053 Male, age 18, unknown 45.0
Pretectal area
nTPM: 51.4
2273 Male, age 74, both hemispheres 62.0
1944 Female, age 72, unknown 57.5
2667 Female, age 75, unknown 55.1
1816 Male, age 51, unknown 53.9
1817 Female, age 42, unknown 53.7
2224 Female, age 72, unknown 52.8
1815 Male, age 53, unknown 49.0
2825 Male, age 18, unknown 49.0
2007 Male, age 72, unknown 48.3
2407 Male, age 75, both hemispheres 43.5
2316 Male, age 76, right hemisphere 40.3
Red nucleus
nTPM: 42.9
2725 Female, age 75, unknown 54.4
2227 Male, age 72, unknown 47.3
1904 Male, age 53, unknown 45.4
2769 Male, age 72, unknown 45.2
2584 Male, age 75, left hemisphere 44.6
2785 Male, age 18, unknown 44.6
2503 Female, age 72, unknown 44.3
1821 Female, age 72, unknown 41.3
1865 Male, age 51, unknown 39.0
1954 Female, age 42, unknown 38.5
2588 Male, age 74, left hemisphere 36.1
2823 Male, age 76, right hemisphere 34.3
Substantia nigra
nTPM: 51.2
1916 Female, age 42, unknown 70.2
2665 Male, age 74, both hemispheres 59.1
1851 Male, age 51, unknown 55.3
2699 Male, age 18, unknown 51.6
1889 Female, age 72, unknown 49.7
2583 Male, age 75, right hemisphere 47.9
1941 Male, age 53, unknown 46.5
2409 Female, age 72, unknown 44.7
2241 Male, age 72, unknown 43.5
2590 Female, age 75, unknown 43.4
Superior colliculus
nTPM: 48.1
2261 Male, age 18, unknown 64.4
1796 Male, age 53, unknown 53.5
2664 Male, age 75, both hemispheres 50.5
2087 Female, age 72, unknown 50.4
1995 Male, age 72, unknown 50.0
1913 Female, age 42, unknown 47.4
1839 Male, age 51, unknown 46.2
2587 Male, age 74, left hemisphere 42.4
2668 Female, age 75, unknown 40.8
1895 Male, age 76, right hemisphere 35.1
Ventral tegmental area
nTPM: 49.3
1915 Female, age 42, unknown 57.5
2021 Male, age 53, unknown 50.6
1942 Male, age 51, unknown 50.4
2218 Male, age 76, both hemispheres 49.2
2410 Female, age 72, unknown 47.3
2223 Female, age 72, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.3
Samples: 183

Max nTPM: 110.2
Min nTPM: 25.5
Std nTPM: 14.0
Median nTPM: 60.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 110.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 91.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 85.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 84.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 84.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 82.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 82.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 81.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 80.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 80.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.5
FF:10158-103A5 76 years, female 92.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.7
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.4
Sample A Female 25.1
Sample B Female 22.4
Sample C Male 23.0
Sample D Male 20.4
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 17.2
Sample A Female 26.1
Sample B Female 20.5
Sample C Male 24.8
Sample D Male 17.2
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 18.1
Min nTPM: 15.3
Sample B Female 17.2
Sample C Male 18.1
Sample D Male 15.3
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.7
Sample A Female 23.0
Sample B Female 32.2
Sample C Male 21.4
Sample D Male 19.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.4
Sample A Male 14.2
Sample B Male 13.4
Sample C Female 13.9
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
532673 Antisense, RP_040825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.9

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