MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:24.2 nTPM
GTEx:21.8 nTPM
FANTOM5:90.7 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:20.7 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2411 Female, age 72, unknown 27.0
1833 Male, age 53, unknown 24.1
1870 Female, age 42, unknown 23.8
1830 Male, age 51, unknown 23.6
2586 Male, age 75, left hemisphere 23.4
2019 Male, age 18, unknown 23.2
1827 Male, age 72, unknown 22.5
2666 Male, age 74, left hemisphere 21.9
2828 Female, age 72, unknown 21.6
2219 Male, age 76, both hemispheres 20.6
Dorsal raphe nucleus
nTPM: 19.6
2750 Male, age 76, both hemispheres 22.1
2016 Female, age 72, unknown 20.3
1828 Male, age 53, unknown 19.7
2047 Male, age 72, unknown 18.4
2298 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 21.7
2097 Female, age 72, unknown 21.9
1848 Female, age 42, unknown 21.8
1890 Male, age 53, unknown 21.5
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Periaquaductal grey, anterior
nTPM: 21.3
1947 Male, age 18, unknown 23.8
2502 Female, age 75, unknown 21.1
1795 Male, age 51, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 20.2
1831 Male, age 72, unknown 21.8
2464 Female, age 72, unknown 21.5
1840 Male, age 53, unknown 19.4
2850 Male, age 76, both hemispheres 18.0
Periaquaductal grey, lateral
nTPM: 19.8
2053 Male, age 18, unknown 21.5
2140 Male, age 76, both hemispheres 19.1
2272 Male, age 74, both hemispheres 18.8
Pretectal area
nTPM: 21.0
2316 Male, age 76, right hemisphere 23.5
1815 Male, age 53, unknown 22.6
1816 Male, age 51, unknown 21.6
2825 Male, age 18, unknown 21.4
1817 Female, age 42, unknown 21.3
2007 Male, age 72, unknown 21.2
1944 Female, age 72, unknown 20.6
2407 Male, age 75, both hemispheres 20.2
2224 Female, age 72, unknown 20.0
2667 Female, age 75, unknown 20.0
2273 Male, age 74, both hemispheres 18.7
Red nucleus
nTPM: 24.2
2588 Male, age 74, left hemisphere 27.0
1821 Female, age 72, unknown 26.9
2503 Female, age 72, unknown 25.8
1904 Male, age 53, unknown 25.5
1865 Male, age 51, unknown 24.5
2823 Male, age 76, right hemisphere 24.1
2725 Female, age 75, unknown 23.8
2769 Male, age 72, unknown 23.7
2227 Male, age 72, unknown 23.0
1954 Female, age 42, unknown 22.6
2785 Male, age 18, unknown 22.1
2584 Male, age 75, left hemisphere 21.9
Substantia nigra
nTPM: 22.8
2409 Female, age 72, unknown 24.7
2583 Male, age 75, right hemisphere 24.6
2241 Male, age 72, unknown 24.4
1851 Male, age 51, unknown 23.5
1916 Female, age 42, unknown 22.4
1941 Male, age 53, unknown 22.4
2699 Male, age 18, unknown 22.4
2665 Male, age 74, both hemispheres 22.3
2590 Female, age 75, unknown 21.8
1889 Female, age 72, unknown 19.4
Superior colliculus
nTPM: 21.8
2668 Female, age 75, unknown 24.3
1839 Male, age 51, unknown 23.0
1913 Female, age 42, unknown 23.0
1895 Male, age 76, right hemisphere 22.6
2087 Female, age 72, unknown 22.1
1995 Male, age 72, unknown 21.9
1796 Male, age 53, unknown 20.6
2664 Male, age 75, both hemispheres 20.5
2587 Male, age 74, left hemisphere 20.4
2261 Male, age 18, unknown 19.3
Ventral tegmental area
nTPM: 21.1
2410 Female, age 72, unknown 25.7
1915 Female, age 42, unknown 22.4
2218 Male, age 76, both hemispheres 20.5
1942 Male, age 51, unknown 20.2
2021 Male, age 53, unknown 19.8
2223 Female, age 72, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.8
Samples: 183

Max nTPM: 41.0
Min nTPM: 12.4
Std nTPM: 4.6
Median nTPM: 20.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 40.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 32.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.7
FF:10158-103A5 76 years, female 90.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 50.1
Min nTPM: 36.0
Sample A Female 43.1
Sample B Female 36.0
Sample C Male 40.1
Sample D Male 50.1
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 39.1
Sample A Female 54.8
Sample B Female 39.1
Sample C Male 43.7
Sample D Male 45.4
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 38.3
Min nTPM: 37.8
Sample B Female 37.8
Sample C Male 38.3
Sample D Male 37.8
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 48.3
Min nTPM: 40.1
Sample A Female 48.3
Sample B Female 40.1
Sample C Male 47.6
Sample D Male 46.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 21.3
Min nTPM: 20.0
Sample A Male 21.3
Sample B Male 20.2
Sample C Female 21.2
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69526856 Antisense, RP_050421_01_G07, Mouse strain C57BL/6J (56 days, male) 0.5

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