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RPLP2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPLP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1045.3 nTPM
FANTOM5:719.2 Scaled Tags Per Million
Pig:45.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053635
Glial cells Not detected
Neuronal cells Low

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1045.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1045.3
Samples: 300

Max nTPM: 2496.4
Min nTPM: 431.5
Std nTPM: 309.8
Median nTPM: 984.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2496.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2397.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2118.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2070.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2048.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1953.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1876.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1871.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1853.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1849.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1815.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1739.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1738.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1654.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1590.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1582.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1578.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1541.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1524.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1523.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1517.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1508.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1492.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1480.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1474.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1474.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1465.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1430.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1423.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1406.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1401.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1399.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1396.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1388.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1365.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1363.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1338.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1327.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1327.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1326.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1319.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1311.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1311.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1306.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1301.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1297.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1291.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1286.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1285.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1283.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1278.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1277.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1271.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1269.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1264.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1261.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1260.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1260.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1253.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1252.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1251.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1247.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1244.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1239.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1235.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1233.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1233.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1227.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1224.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1224.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1212.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1195.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1194.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1189.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1188.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1186.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1180.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1180.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1175.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1175.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1168.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1163.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1155.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1155.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1146.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1144.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1142.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1140.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1139.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1139.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1136.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1136.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1132.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1132.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1129.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1128.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1128.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1127.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1126.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1125.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1125.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1125.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1124.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1119.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1118.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1116.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1112.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1112.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1107.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1104.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1101.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1098.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1096.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1095.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1091.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1090.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1087.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1087.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1087.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1078.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1077.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1071.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1070.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1070.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1070.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1069.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1059.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1054.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1054.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1048.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1045.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1042.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1041.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1034.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1032.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1031.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1031.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1027.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1016.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1012.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1009.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1005.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1005.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1000.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 998.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 994.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 991.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 986.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 986.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 985.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 983.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 981.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 981.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 981.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 979.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 974.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 973.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 971.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 967.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 966.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 965.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 964.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 963.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 961.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 960.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 960.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 957.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 955.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 953.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 951.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 948.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 947.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 946.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 942.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 941.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 939.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 939.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 934.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 934.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 933.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 932.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 926.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 924.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 924.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 923.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 923.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 923.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 923.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 922.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 921.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 920.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 914.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 912.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 905.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 904.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 903.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 901.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 901.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 899.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 897.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 897.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 895.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 891.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 887.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 882.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 879.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 876.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 875.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 872.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 870.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 869.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 868.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 863.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 863.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 862.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 860.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 859.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 857.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 856.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 855.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 850.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 846.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 843.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 841.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 835.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 835.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 834.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 834.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 831.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 827.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 827.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 824.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 818.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 818.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 817.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 816.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 815.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 812.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 810.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 806.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 802.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 796.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 796.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 791.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 785.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 785.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 775.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 774.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 768.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 767.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 761.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 759.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 759.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 758.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 752.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 749.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 747.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 746.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 746.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 745.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 735.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 734.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 732.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 732.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 725.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 724.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 723.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 719.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 718.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 714.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 708.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 707.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 703.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 702.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 702.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 701.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 695.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 693.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 681.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 680.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 675.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 670.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 669.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 661.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 657.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 650.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 648.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 647.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 641.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 636.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 612.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 598.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 595.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 588.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 583.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 566.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 544.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 515.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 498.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 431.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

719.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 719.2
FF:10164-103B2 76 years, female 719.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.6
Pig sample Sample description nTPM
Caudate
nTPM: 45.7
Samples: 4

Max nTPM: 50.8
Min nTPM: 38.6
Sample A Female 44.7
Sample B Female 48.5
Sample C Male 50.8
Sample D Male 38.6

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