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RPLP2
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  • SUMMARY

  • TISSUE

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  • CELL LINE

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  • RPLP2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2215.7 nTPM
HPA:894.8 nTPM
GTEx:2215.7 nTPM
FANTOM5:2437.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053635
Glandular cells Medium

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

894.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1027.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1006.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 839.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 705.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2215.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2215.7
Samples: 207

Max nTPM: 5305.8
Min nTPM: 1064.3
Std nTPM: 811.0
Median nTPM: 1978.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5305.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5165.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 5138.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4410.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4164.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4119.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4060.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3956.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3941.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3900.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3756.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3741.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 3656.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3649.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3581.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3568.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3547.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3492.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3448.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3424.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3358.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3314.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3291.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3229.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3209.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3207.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3125.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3108.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 3054.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3030.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3016.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3014.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3011.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2998.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2992.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2959.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2951.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2919.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2917.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2885.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2858.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2856.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2848.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2829.5
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2826.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2810.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2800.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2787.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2775.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2749.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2747.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2742.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2716.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2710.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2629.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2600.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2591.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2590.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2568.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2533.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2499.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 2450.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2443.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2428.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2423.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2422.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2417.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2411.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2399.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2397.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2367.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2367.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 2358.4
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2355.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2302.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2295.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2278.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2270.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2259.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2258.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2206.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2193.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2188.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2180.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2162.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2157.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2148.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2142.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2122.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2118.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2117.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2115.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2103.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2099.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2070.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2070.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2063.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2031.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2026.8
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2023.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2010.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2007.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1989.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1978.3
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1963.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1960.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1940.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1939.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1934.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1932.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1927.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1921.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1916.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1906.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1899.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1895.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1882.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1867.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1851.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1844.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1835.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1829.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1824.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1819.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1811.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1808.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1790.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1789.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1789.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1786.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1780.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1774.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1769.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1742.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1736.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1735.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1724.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1712.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1709.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1708.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1705.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1691.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1687.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1680.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1670.7
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1668.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1662.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1658.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1650.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1644.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1641.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1634.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1629.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1629.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1624.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1621.8
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1621.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1597.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1578.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1573.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1571.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1565.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1553.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1552.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1552.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1544.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1543.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1541.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1535.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1534.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1530.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1520.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1511.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1495.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1473.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1472.3
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1468.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1467.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1464.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1452.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1447.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1446.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1438.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1426.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1425.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1416.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1409.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1405.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1402.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1381.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1369.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1359.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1350.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1329.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1320.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1307.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1302.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1281.5
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1275.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1267.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1258.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1196.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1169.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1147.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1121.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1115.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1064.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2437.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2437.3
FF:10024-101D6 15,40,85 years, mixed 2437.3

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