MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:36.5 nTPM
GTEx:18.6 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:6.2 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.6
1870 Female, age 42, unknown 36.0
2019 Male, age 18, unknown 35.5
2586 Male, age 75, left hemisphere 35.2
1830 Male, age 51, unknown 34.9
1833 Male, age 53, unknown 33.6
2828 Female, age 72, unknown 33.3
2411 Female, age 72, unknown 32.9
2666 Male, age 74, left hemisphere 32.6
1827 Male, age 72, unknown 26.9
2219 Male, age 76, both hemispheres 25.2
Dorsal raphe nucleus
nTPM: 35.5
2047 Male, age 72, unknown 41.0
1828 Male, age 53, unknown 36.6
2750 Male, age 76, both hemispheres 33.6
2298 Female, age 72, unknown 33.4
2016 Female, age 72, unknown 33.1
Inferior colliculus
nTPM: 31.0
2849 Male, age 72, unknown 35.5
1848 Female, age 42, unknown 32.4
1890 Male, age 53, unknown 29.0
2097 Female, age 72, unknown 27.3
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Periaquaductal grey, anterior
nTPM: 30.7
1795 Male, age 51, unknown 31.7
1947 Male, age 18, unknown 31.2
2502 Female, age 75, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 31.0
2850 Male, age 76, both hemispheres 40.3
2464 Female, age 72, unknown 28.6
1840 Male, age 53, unknown 27.9
1831 Male, age 72, unknown 27.0
Periaquaductal grey, lateral
nTPM: 35.9
2272 Male, age 74, both hemispheres 42.7
2140 Male, age 76, both hemispheres 37.0
2053 Male, age 18, unknown 28.0
Pretectal area
nTPM: 32.8
1817 Female, age 42, unknown 39.5
2273 Male, age 74, both hemispheres 39.3
2007 Male, age 72, unknown 36.8
2224 Female, age 72, unknown 35.7
2316 Male, age 76, right hemisphere 34.8
2667 Female, age 75, unknown 32.5
2825 Male, age 18, unknown 30.9
2407 Male, age 75, both hemispheres 30.4
1944 Female, age 72, unknown 27.9
1815 Male, age 53, unknown 27.4
1816 Male, age 51, unknown 25.8
Red nucleus
nTPM: 34.7
2769 Male, age 72, unknown 40.9
2785 Male, age 18, unknown 40.4
2227 Male, age 72, unknown 38.7
1865 Male, age 51, unknown 37.1
2725 Female, age 75, unknown 36.2
2823 Male, age 76, right hemisphere 35.4
2503 Female, age 72, unknown 34.8
1821 Female, age 72, unknown 32.6
2584 Male, age 75, left hemisphere 31.5
1954 Female, age 42, unknown 31.0
1904 Male, age 53, unknown 30.9
2588 Male, age 74, left hemisphere 26.6
Substantia nigra
nTPM: 30.8
1941 Male, age 53, unknown 39.6
1851 Male, age 51, unknown 35.5
2699 Male, age 18, unknown 35.0
1889 Female, age 72, unknown 33.7
2665 Male, age 74, both hemispheres 30.8
2583 Male, age 75, right hemisphere 30.3
1916 Female, age 42, unknown 29.9
2590 Female, age 75, unknown 29.9
2409 Female, age 72, unknown 24.7
2241 Male, age 72, unknown 18.5
Superior colliculus
nTPM: 29.9
2587 Male, age 74, left hemisphere 34.5
1913 Female, age 42, unknown 33.4
1995 Male, age 72, unknown 32.7
1796 Male, age 53, unknown 30.6
1839 Male, age 51, unknown 30.6
2668 Female, age 75, unknown 30.2
2087 Female, age 72, unknown 27.8
1895 Male, age 76, right hemisphere 27.1
2261 Male, age 18, unknown 26.0
2664 Male, age 75, both hemispheres 25.8
Ventral tegmental area
nTPM: 32.0
2223 Female, age 72, unknown 36.6
2021 Male, age 53, unknown 34.0
2218 Male, age 76, both hemispheres 31.8
2410 Female, age 72, unknown 31.6
1915 Female, age 42, unknown 30.6
1942 Male, age 51, unknown 27.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 183

Max nTPM: 54.9
Min nTPM: 10.2
Std nTPM: 5.9
Median nTPM: 18.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 54.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 45.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 35.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 27.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.4
Samples: 4

Max nTPM: 49.0
Min nTPM: 29.9
Sample A Female 49.0
Sample B Female 39.5
Sample C Male 47.0
Sample D Male 29.9
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 47.3
Min nTPM: 32.9
Sample A Female 35.7
Sample B Female 32.9
Sample C Male 47.3
Sample D Male 36.6
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 39.9
Min nTPM: 28.3
Sample B Female 28.5
Sample C Male 39.9
Sample D Male 28.3
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 39.2
Sample A Female 43.3
Sample B Female 39.2
Sample C Male 45.5
Sample D Male 39.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.8
Sample A Male 6.1
Sample B Male 6.1
Sample C Female 4.8
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68743841 Antisense, RP_050203_01_G01, Mouse strain C57BL/6J (56 days, male) 1.2

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