MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.8 nTPM
HPA Brain:87.5 nTPM
GTEx:108.8 nTPM
FANTOM5:105.1 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:25.5 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.0
2019 Male, age 18, unknown 99.9
2411 Female, age 72, unknown 86.0
2828 Female, age 72, unknown 85.5
1870 Female, age 42, unknown 83.3
2666 Male, age 74, left hemisphere 80.5
1833 Male, age 53, unknown 80.1
1830 Male, age 51, unknown 80.0
2586 Male, age 75, left hemisphere 78.8
1827 Male, age 72, unknown 77.0
2219 Male, age 76, both hemispheres 58.3
Dorsal raphe nucleus
nTPM: 84.3
2298 Female, age 72, unknown 91.9
2750 Male, age 76, both hemispheres 87.4
2047 Male, age 72, unknown 86.6
1828 Male, age 53, unknown 81.1
2016 Female, age 72, unknown 74.3
Inferior colliculus
nTPM: 74.9
2097 Female, age 72, unknown 84.7
1848 Female, age 42, unknown 73.5
1890 Male, age 53, unknown 72.8
2849 Male, age 72, unknown 68.6
Median raphe nucleus
nTPM: 75.1
2220 Male, age 76, midline 75.1
Periaquaductal grey, anterior
nTPM: 77.2
1947 Male, age 18, unknown 81.0
2502 Female, age 75, unknown 77.5
1795 Male, age 51, unknown 73.1
Periaquaductal grey, dorsal
nTPM: 69.6
2850 Male, age 76, both hemispheres 72.3
1840 Male, age 53, unknown 70.9
1831 Male, age 72, unknown 67.6
2464 Female, age 72, unknown 67.4
Periaquaductal grey, lateral
nTPM: 77.7
2272 Male, age 74, both hemispheres 83.7
2140 Male, age 76, both hemispheres 75.5
2053 Male, age 18, unknown 74.0
Pretectal area
nTPM: 81.2
2007 Male, age 72, unknown 95.6
1817 Female, age 42, unknown 92.9
2273 Male, age 74, both hemispheres 89.5
1944 Female, age 72, unknown 86.0
1815 Male, age 53, unknown 82.4
1816 Male, age 51, unknown 82.3
2224 Female, age 72, unknown 74.4
2316 Male, age 76, right hemisphere 73.6
2667 Female, age 75, unknown 73.3
2825 Male, age 18, unknown 72.5
2407 Male, age 75, both hemispheres 70.6
Red nucleus
nTPM: 87.5
2785 Male, age 18, unknown 99.3
1954 Female, age 42, unknown 93.8
1821 Female, age 72, unknown 91.8
2227 Male, age 72, unknown 91.6
2769 Male, age 72, unknown 91.3
1865 Male, age 51, unknown 90.9
1904 Male, age 53, unknown 89.0
2503 Female, age 72, unknown 87.7
2584 Male, age 75, left hemisphere 79.5
2588 Male, age 74, left hemisphere 79.1
2725 Female, age 75, unknown 78.1
2823 Male, age 76, right hemisphere 77.9
Substantia nigra
nTPM: 81.9
1889 Female, age 72, unknown 94.9
1941 Male, age 53, unknown 90.2
1851 Male, age 51, unknown 89.6
1916 Female, age 42, unknown 86.7
2583 Male, age 75, right hemisphere 86.4
2590 Female, age 75, unknown 80.3
2665 Male, age 74, both hemispheres 75.4
2409 Female, age 72, unknown 75.2
2699 Male, age 18, unknown 71.4
2241 Male, age 72, unknown 68.8
Superior colliculus
nTPM: 80.1
2668 Female, age 75, unknown 98.9
2587 Male, age 74, left hemisphere 85.1
1913 Female, age 42, unknown 84.1
1995 Male, age 72, unknown 82.3
1796 Male, age 53, unknown 79.9
2087 Female, age 72, unknown 78.4
1839 Male, age 51, unknown 76.6
2664 Male, age 75, both hemispheres 72.2
1895 Male, age 76, right hemisphere 71.8
2261 Male, age 18, unknown 71.4
Ventral tegmental area
nTPM: 80.4
2410 Female, age 72, unknown 93.3
2223 Female, age 72, unknown 84.5
1915 Female, age 42, unknown 79.2
2218 Male, age 76, both hemispheres 77.3
1942 Male, age 51, unknown 75.5
2021 Male, age 53, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.8
Samples: 183

Max nTPM: 204.3
Min nTPM: 38.2
Std nTPM: 25.5
Median nTPM: 107.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 204.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 200.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 176.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 173.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 173.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 172.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 169.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 167.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 161.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 157.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 152.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.1
FF:10158-103A5 76 years, female 105.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.0
Sample A Female 24.2
Sample B Female 19.7
Sample C Male 18.0
Sample D Male 19.8
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 31.4
Min nTPM: 14.9
Sample A Female 31.4
Sample B Female 19.8
Sample C Male 15.6
Sample D Male 14.9
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 19.4
Min nTPM: 17.0
Sample B Female 19.4
Sample C Male 18.4
Sample D Male 17.0
Superior colliculi
nTPM: 20.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.2
Sample A Female 24.0
Sample B Female 22.3
Sample C Male 18.9
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 29.6
Min nTPM: 22.0
Sample A Male 29.6
Sample B Male 22.0
Sample C Female 26.3
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68545723 Antisense, RP_050120_01_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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