MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:55.3 nTPM
GTEx:16.7 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:21.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.8
2219 Male, age 76, both hemispheres 80.4
2586 Male, age 75, left hemisphere 78.6
2828 Female, age 72, unknown 55.1
2019 Male, age 18, unknown 51.8
2666 Male, age 74, left hemisphere 50.1
1827 Male, age 72, unknown 45.4
2411 Female, age 72, unknown 38.8
1833 Male, age 53, unknown 34.0
1830 Male, age 51, unknown 33.1
1870 Female, age 42, unknown 30.9
Dorsal raphe nucleus
nTPM: 40.7
1828 Male, age 53, unknown 49.6
2047 Male, age 72, unknown 44.4
2298 Female, age 72, unknown 44.4
2750 Male, age 76, both hemispheres 33.1
2016 Female, age 72, unknown 31.9
Inferior colliculus
nTPM: 40.0
2097 Female, age 72, unknown 45.4
1890 Male, age 53, unknown 44.6
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 32.9
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 55.3
1947 Male, age 18, unknown 57.6
1795 Male, age 51, unknown 54.5
2502 Female, age 75, unknown 53.8
Periaquaductal grey, dorsal
nTPM: 30.4
1831 Male, age 72, unknown 35.7
2464 Female, age 72, unknown 33.6
1840 Male, age 53, unknown 28.7
2850 Male, age 76, both hemispheres 23.6
Periaquaductal grey, lateral
nTPM: 26.4
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 25.9
2140 Male, age 76, both hemispheres 24.7
Pretectal area
nTPM: 54.9
1816 Male, age 51, unknown 89.6
1817 Female, age 42, unknown 77.1
1944 Female, age 72, unknown 72.9
2007 Male, age 72, unknown 72.2
2667 Female, age 75, unknown 62.3
1815 Male, age 53, unknown 53.9
2407 Male, age 75, both hemispheres 48.7
2224 Female, age 72, unknown 35.8
2825 Male, age 18, unknown 35.6
2273 Male, age 74, both hemispheres 29.5
2316 Male, age 76, right hemisphere 26.6
Red nucleus
nTPM: 34.9
2584 Male, age 75, left hemisphere 66.7
2785 Male, age 18, unknown 51.9
2769 Male, age 72, unknown 35.7
1954 Female, age 42, unknown 35.2
2588 Male, age 74, left hemisphere 34.0
2227 Male, age 72, unknown 33.6
1821 Female, age 72, unknown 31.0
2503 Female, age 72, unknown 30.2
2823 Male, age 76, right hemisphere 28.3
1904 Male, age 53, unknown 27.7
1865 Male, age 51, unknown 26.8
2725 Female, age 75, unknown 17.9
Substantia nigra
nTPM: 48.3
2665 Male, age 74, both hemispheres 62.0
1889 Female, age 72, unknown 61.8
1941 Male, age 53, unknown 61.1
2583 Male, age 75, right hemisphere 53.7
2590 Female, age 75, unknown 49.1
1916 Female, age 42, unknown 48.3
1851 Male, age 51, unknown 45.6
2241 Male, age 72, unknown 39.3
2409 Female, age 72, unknown 33.6
2699 Male, age 18, unknown 27.9
Superior colliculus
nTPM: 47.5
2087 Female, age 72, unknown 70.6
2664 Male, age 75, both hemispheres 66.8
2668 Female, age 75, unknown 66.0
2261 Male, age 18, unknown 55.6
1796 Male, age 53, unknown 48.4
1839 Male, age 51, unknown 39.1
1913 Female, age 42, unknown 37.4
1995 Male, age 72, unknown 33.1
1895 Male, age 76, right hemisphere 31.5
2587 Male, age 74, left hemisphere 26.6
Ventral tegmental area
nTPM: 41.5
1942 Male, age 51, unknown 49.5
2410 Female, age 72, unknown 42.0
1915 Female, age 42, unknown 41.9
2218 Male, age 76, both hemispheres 41.5
2223 Female, age 72, unknown 39.2
2021 Male, age 53, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 183

Max nTPM: 72.6
Min nTPM: 1.5
Std nTPM: 11.2
Median nTPM: 14.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 72.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 58.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 49.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 47.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 37.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 37.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 18.6
Sample A Female 39.9
Sample B Female 21.1
Sample C Male 33.4
Sample D Male 18.6
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 52.5
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 28.5
Sample C Male 52.5
Sample D Male 45.6
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 32.3
Min nTPM: 24.1
Sample B Female 31.8
Sample C Male 32.3
Sample D Male 24.1
Superior colliculi
nTPM: 39.1
Samples: 4

Max nTPM: 45.8
Min nTPM: 25.9
Sample A Female 42.3
Sample B Female 25.9
Sample C Male 45.8
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 21.5
Min nTPM: 20.7
Sample A Male 21.2
Sample B Male 20.7
Sample C Female 21.5
Sample D Female 21.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo