MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA Brain:44.2 nTPM
GTEx:40.1 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:1.8 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2019 Male, age 18, unknown 54.9
2666 Male, age 74, left hemisphere 54.9
2828 Female, age 72, unknown 37.6
1833 Male, age 53, unknown 36.0
2411 Female, age 72, unknown 33.3
1830 Male, age 51, unknown 30.4
1870 Female, age 42, unknown 29.7
2586 Male, age 75, left hemisphere 29.6
1827 Male, age 72, unknown 24.3
2219 Male, age 76, both hemispheres 18.5
Dorsal raphe nucleus
nTPM: 30.7
2750 Male, age 76, both hemispheres 36.9
1828 Male, age 53, unknown 35.7
2016 Female, age 72, unknown 27.8
2047 Male, age 72, unknown 27.0
2298 Female, age 72, unknown 26.1
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 41.1
1890 Male, age 53, unknown 31.0
1848 Female, age 42, unknown 26.7
2849 Male, age 72, unknown 22.1
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Periaquaductal grey, anterior
nTPM: 27.4
2502 Female, age 75, unknown 35.7
1947 Male, age 18, unknown 23.9
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 21.5
2464 Female, age 72, unknown 29.8
1831 Male, age 72, unknown 23.9
1840 Male, age 53, unknown 16.2
2850 Male, age 76, both hemispheres 16.1
Periaquaductal grey, lateral
nTPM: 20.0
2053 Male, age 18, unknown 20.8
2272 Male, age 74, both hemispheres 20.8
2140 Male, age 76, both hemispheres 18.4
Pretectal area
nTPM: 28.4
1817 Female, age 42, unknown 48.7
2007 Male, age 72, unknown 47.0
1815 Male, age 53, unknown 33.7
2316 Male, age 76, right hemisphere 29.6
1816 Male, age 51, unknown 28.9
1944 Female, age 72, unknown 28.6
2667 Female, age 75, unknown 26.0
2224 Female, age 72, unknown 25.6
2825 Male, age 18, unknown 16.8
2273 Male, age 74, both hemispheres 14.5
2407 Male, age 75, both hemispheres 13.5
Red nucleus
nTPM: 44.2
2785 Male, age 18, unknown 55.2
1904 Male, age 53, unknown 55.1
2588 Male, age 74, left hemisphere 52.3
1954 Female, age 42, unknown 51.5
1821 Female, age 72, unknown 47.1
2769 Male, age 72, unknown 43.8
2227 Male, age 72, unknown 43.3
2823 Male, age 76, right hemisphere 42.3
1865 Male, age 51, unknown 41.0
2503 Female, age 72, unknown 37.5
2584 Male, age 75, left hemisphere 30.8
2725 Female, age 75, unknown 30.0
Substantia nigra
nTPM: 32.8
2665 Male, age 74, both hemispheres 59.7
1851 Male, age 51, unknown 35.7
2241 Male, age 72, unknown 35.5
1889 Female, age 72, unknown 33.3
2409 Female, age 72, unknown 29.4
1916 Female, age 42, unknown 27.5
2590 Female, age 75, unknown 27.5
1941 Male, age 53, unknown 27.4
2583 Male, age 75, right hemisphere 27.1
2699 Male, age 18, unknown 24.4
Superior colliculus
nTPM: 26.9
2587 Male, age 74, left hemisphere 34.2
2668 Female, age 75, unknown 33.2
2087 Female, age 72, unknown 32.4
1895 Male, age 76, right hemisphere 31.0
2261 Male, age 18, unknown 27.1
1839 Male, age 51, unknown 25.9
1796 Male, age 53, unknown 24.3
1995 Male, age 72, unknown 23.2
1913 Female, age 42, unknown 21.8
2664 Male, age 75, both hemispheres 15.6
Ventral tegmental area
nTPM: 28.9
2218 Male, age 76, both hemispheres 36.9
1942 Male, age 51, unknown 32.1
2223 Female, age 72, unknown 30.4
2410 Female, age 72, unknown 29.5
1915 Female, age 42, unknown 24.0
2021 Male, age 53, unknown 20.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 183

Max nTPM: 197.2
Min nTPM: 3.8
Std nTPM: 32.2
Median nTPM: 32.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 197.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 175.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 147.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 143.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 116.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 115.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 115.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 109.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 108.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 99.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.0
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.1
Sample A Female 11.1
Sample B Female 8.1
Sample C Male 14.2
Sample D Male 10.4
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 6.4
Sample A Female 12.3
Sample B Female 6.4
Sample C Male 17.1
Sample D Male 8.8
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 10.4
Min nTPM: 5.4
Sample B Female 6.5
Sample C Male 10.4
Sample D Male 5.4
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 18.0
Min nTPM: 6.8
Sample A Female 11.2
Sample B Female 6.8
Sample C Male 18.0
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.3
Sample A Male 1.3
Sample B Male 1.9
Sample C Female 1.7
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71213677 Antisense, RP_050816_04_D07, Mouse strain C57BL/6J (56 days, male) 0.5

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