MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.2 nTPM
HPA Brain:91.3 nTPM
GTEx:87.2 nTPM
FANTOM5:123.8 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:67.3 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.9
2411 Female, age 72, unknown 82.1
2019 Male, age 18, unknown 81.0
2828 Female, age 72, unknown 79.2
2219 Male, age 76, both hemispheres 77.1
1870 Female, age 42, unknown 75.6
1827 Male, age 72, unknown 75.1
2586 Male, age 75, left hemisphere 73.2
1833 Male, age 53, unknown 73.0
2666 Male, age 74, left hemisphere 67.6
1830 Male, age 51, unknown 65.2
Dorsal raphe nucleus
nTPM: 82.1
2298 Female, age 72, unknown 96.0
1828 Male, age 53, unknown 81.4
2047 Male, age 72, unknown 80.3
2750 Male, age 76, both hemispheres 76.6
2016 Female, age 72, unknown 76.3
Inferior colliculus
nTPM: 70.9
2097 Female, age 72, unknown 72.7
1848 Female, age 42, unknown 72.1
1890 Male, age 53, unknown 71.1
2849 Male, age 72, unknown 67.8
Median raphe nucleus
nTPM: 72.1
2220 Male, age 76, midline 72.1
Periaquaductal grey, anterior
nTPM: 76.2
1795 Male, age 51, unknown 80.7
1947 Male, age 18, unknown 78.7
2502 Female, age 75, unknown 69.1
Periaquaductal grey, dorsal
nTPM: 67.5
2850 Male, age 76, both hemispheres 74.0
1840 Male, age 53, unknown 70.7
2464 Female, age 72, unknown 66.5
1831 Male, age 72, unknown 58.7
Periaquaductal grey, lateral
nTPM: 73.0
2272 Male, age 74, both hemispheres 91.2
2053 Male, age 18, unknown 64.3
2140 Male, age 76, both hemispheres 63.5
Pretectal area
nTPM: 78.2
2667 Female, age 75, unknown 92.0
1817 Female, age 42, unknown 89.8
2273 Male, age 74, both hemispheres 88.3
2007 Male, age 72, unknown 84.8
1816 Male, age 51, unknown 82.3
1815 Male, age 53, unknown 81.3
1944 Female, age 72, unknown 81.1
2224 Female, age 72, unknown 78.1
2825 Male, age 18, unknown 67.5
2407 Male, age 75, both hemispheres 59.0
2316 Male, age 76, right hemisphere 56.4
Red nucleus
nTPM: 79.1
1821 Female, age 72, unknown 94.7
2503 Female, age 72, unknown 87.9
2725 Female, age 75, unknown 85.6
1904 Male, age 53, unknown 83.3
2769 Male, age 72, unknown 83.1
1865 Male, age 51, unknown 81.4
1954 Female, age 42, unknown 81.4
2227 Male, age 72, unknown 77.4
2785 Male, age 18, unknown 76.6
2823 Male, age 76, right hemisphere 69.9
2588 Male, age 74, left hemisphere 67.3
2584 Male, age 75, left hemisphere 60.9
Substantia nigra
nTPM: 91.3
1916 Female, age 42, unknown 130.1
1851 Male, age 51, unknown 107.8
2241 Male, age 72, unknown 98.1
2699 Male, age 18, unknown 96.6
1889 Female, age 72, unknown 88.4
1941 Male, age 53, unknown 85.5
2409 Female, age 72, unknown 83.4
2590 Female, age 75, unknown 76.8
2665 Male, age 74, both hemispheres 75.8
2583 Male, age 75, right hemisphere 70.4
Superior colliculus
nTPM: 70.3
2087 Female, age 72, unknown 78.0
1796 Male, age 53, unknown 77.7
2261 Male, age 18, unknown 76.3
2587 Male, age 74, left hemisphere 75.9
2668 Female, age 75, unknown 69.5
1995 Male, age 72, unknown 68.3
1913 Female, age 42, unknown 67.2
1895 Male, age 76, right hemisphere 65.6
1839 Male, age 51, unknown 63.7
2664 Male, age 75, both hemispheres 60.9
Ventral tegmental area
nTPM: 84.0
2410 Female, age 72, unknown 101.5
1915 Female, age 42, unknown 96.8
2218 Male, age 76, both hemispheres 88.9
1942 Male, age 51, unknown 74.5
2223 Female, age 72, unknown 73.1
2021 Male, age 53, unknown 69.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.2
Samples: 183

Max nTPM: 240.3
Min nTPM: 40.9
Std nTPM: 26.2
Median nTPM: 82.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 240.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 182.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 158.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 157.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 155.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 151.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 145.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 144.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 132.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 132.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.8
FF:10158-103A5 76 years, female 123.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 42.5
Min nTPM: 24.0
Sample A Female 42.5
Sample B Female 24.0
Sample C Male 35.4
Sample D Male 28.8
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 29.7
Sample A Female 40.0
Sample B Female 29.7
Sample C Male 46.1
Sample D Male 29.9
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 30.7
Min nTPM: 23.8
Sample B Female 25.6
Sample C Male 30.7
Sample D Male 23.8
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 49.7
Min nTPM: 31.6
Sample A Female 42.7
Sample B Female 31.6
Sample C Male 49.7
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 67.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 72.2
Min nTPM: 64.4
Sample A Male 64.4
Sample B Male 65.5
Sample C Female 67.2
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70192129 Antisense, RP_050517_01_C12, Mouse strain C57BL/6J (56 days, male) 3.9
70919651 Antisense, RP_050713_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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