MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:214.6 nTPM
HPA Brain:60.6 nTPM
GTEx:214.6 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:227.9 nTPM
Mouse:219.5 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.6
2411 Female, age 72, unknown 62.2
2019 Male, age 18, unknown 59.8
1827 Male, age 72, unknown 57.4
2219 Male, age 76, both hemispheres 47.7
1870 Female, age 42, unknown 46.8
2828 Female, age 72, unknown 46.0
1833 Male, age 53, unknown 44.5
1830 Male, age 51, unknown 42.1
2586 Male, age 75, left hemisphere 42.0
2666 Male, age 74, left hemisphere 37.7
Dorsal raphe nucleus
nTPM: 53.4
2298 Female, age 72, unknown 65.5
2750 Male, age 76, both hemispheres 56.0
2047 Male, age 72, unknown 50.4
1828 Male, age 53, unknown 50.2
2016 Female, age 72, unknown 44.8
Inferior colliculus
nTPM: 47.1
2097 Female, age 72, unknown 56.3
1848 Female, age 42, unknown 47.4
1890 Male, age 53, unknown 46.3
2849 Male, age 72, unknown 38.4
Median raphe nucleus
nTPM: 49.1
2220 Male, age 76, midline 49.1
Periaquaductal grey, anterior
nTPM: 53.8
1795 Male, age 51, unknown 55.7
1947 Male, age 18, unknown 53.3
2502 Female, age 75, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 43.0
1840 Male, age 53, unknown 46.4
2464 Female, age 72, unknown 45.4
1831 Male, age 72, unknown 40.2
2850 Male, age 76, both hemispheres 40.1
Periaquaductal grey, lateral
nTPM: 47.1
2272 Male, age 74, both hemispheres 61.4
2053 Male, age 18, unknown 40.2
2140 Male, age 76, both hemispheres 39.6
Pretectal area
nTPM: 53.9
2007 Male, age 72, unknown 64.0
1817 Female, age 42, unknown 63.5
1816 Male, age 51, unknown 60.2
2273 Male, age 74, both hemispheres 60.1
1815 Male, age 53, unknown 58.0
1944 Female, age 72, unknown 56.1
2667 Female, age 75, unknown 53.2
2316 Male, age 76, right hemisphere 50.1
2224 Female, age 72, unknown 48.0
2825 Male, age 18, unknown 42.7
2407 Male, age 75, both hemispheres 36.6
Red nucleus
nTPM: 50.5
1821 Female, age 72, unknown 60.1
2785 Male, age 18, unknown 57.9
2503 Female, age 72, unknown 57.6
2725 Female, age 75, unknown 55.5
1865 Male, age 51, unknown 51.3
1904 Male, age 53, unknown 49.1
2227 Male, age 72, unknown 49.1
2769 Male, age 72, unknown 48.7
2823 Male, age 76, right hemisphere 46.8
1954 Female, age 42, unknown 45.0
2588 Male, age 74, left hemisphere 44.2
2584 Male, age 75, left hemisphere 40.4
Substantia nigra
nTPM: 60.6
1916 Female, age 42, unknown 79.0
2241 Male, age 72, unknown 68.9
1851 Male, age 51, unknown 68.2
2665 Male, age 74, both hemispheres 60.5
1941 Male, age 53, unknown 59.5
2409 Female, age 72, unknown 59.4
1889 Female, age 72, unknown 58.3
2590 Female, age 75, unknown 58.2
2699 Male, age 18, unknown 53.6
2583 Male, age 75, right hemisphere 40.1
Superior colliculus
nTPM: 49.5
1796 Male, age 53, unknown 59.6
2587 Male, age 74, left hemisphere 55.8
2087 Female, age 72, unknown 55.6
2261 Male, age 18, unknown 54.8
1895 Male, age 76, right hemisphere 49.2
2668 Female, age 75, unknown 46.7
1839 Male, age 51, unknown 45.7
1913 Female, age 42, unknown 43.5
1995 Male, age 72, unknown 42.4
2664 Male, age 75, both hemispheres 41.5
Ventral tegmental area
nTPM: 53.8
1915 Female, age 42, unknown 63.1
2410 Female, age 72, unknown 61.3
2218 Male, age 76, both hemispheres 55.3
2223 Female, age 72, unknown 51.7
1942 Male, age 51, unknown 47.6
2021 Male, age 53, unknown 43.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 214.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 214.6
Samples: 183

Max nTPM: 339.6
Min nTPM: 115.9
Std nTPM: 39.5
Median nTPM: 210.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 339.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 334.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 332.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 329.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 328.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 316.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 307.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 307.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 294.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 288.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 227.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 220.9
Samples: 4

Max nTPM: 286.3
Min nTPM: 174.5
Sample A Female 286.3
Sample B Female 214.1
Sample C Male 174.5
Sample D Male 208.5
Midbrain
nTPM: 225.5
Samples: 4

Max nTPM: 339.8
Min nTPM: 171.7
Sample A Female 339.8
Sample B Female 216.3
Sample C Male 174.0
Sample D Male 171.7
Periaqueductal gray
nTPM: 180.7
Samples: 3

Max nTPM: 187.9
Min nTPM: 166.6
Sample B Female 187.6
Sample C Male 187.9
Sample D Male 166.6
Superior colliculi
nTPM: 227.8
Samples: 4

Max nTPM: 276.0
Min nTPM: 192.5
Sample A Female 276.0
Sample B Female 245.6
Sample C Male 192.5
Sample D Male 197.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 219.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.5
Samples: 4

Max nTPM: 238.4
Min nTPM: 203.3
Sample A Male 238.4
Sample B Male 208.6
Sample C Female 203.3
Sample D Female 227.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68910971 Antisense, RP_050118_02_H06, Mouse strain C57BL/6J (56 days, male) 1.4

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