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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:203.8 nTPM
HPA Brain:53.4 nTPM
GTEx:203.8 nTPM
FANTOM5:101.9 Scaled Tags Per Million
Pig:147.9 nTPM
Mouse:244.4 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Sample id Sample description nTPM
Amygdala
nTPM: 53.4
2814 Male, age 76, right hemisphere 56.6
2517 Female, age 94, left hemisphere 54.5
2514 Male, age 75, right hemisphere 53.0
1987 Female, age 91, left hemisphere 52.6
2695 Female, age 67, right hemisphere 50.2
Basal amygdala
nTPM: 41.0
2609 Male, age 75, right hemisphere 47.2
2110 Male, age 80, left hemisphere 46.7
2243 Female, age 91, right hemisphere 42.0
2685 Female, age 94, left hemisphere 38.5
1955 Male, age 76, both hemispheres 37.1
2827 Female, age 67, right hemisphere 34.5
Central amygdala
nTPM: 47.9
2826 Female, age 94, left hemisphere 55.8
1905 Male, age 76, both hemispheres 55.3
2515 Male, age 75, right hemisphere 49.3
2239 Male, age 80, left hemisphere 42.6
2701 Female, age 91, right hemisphere 36.5
Corticomedial amygdala
nTPM: 45.1
2428 Male, age 75, right hemisphere 52.1
2829 Male, age 80, left hemisphere 49.0
2242 Female, age 91, right hemisphere 45.8
2240 Male, age 76, both hemispheres 43.4
2429 Female, age 94, left hemisphere 42.0
2535 Female, age 67, right hemisphere 38.3
Lateral amygdala
nTPM: 44.3
2516 Male, age 75, right hemisphere 59.3
1883 Male, age 76, both hemispheres 50.4
2534 Female, age 94, left hemisphere 42.8
2256 Male, age 80, left hemisphere 39.4
2830 Female, age 67, right hemisphere 38.8
2255 Female, age 91, right hemisphere 35.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 203.8
Samples: 181

Max nTPM: 507.7
Min nTPM: 107.5
Std nTPM: 58.6
Median nTPM: 190.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 507.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 478.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 424.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 380.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 373.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 362.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 356.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 317.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 300.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 293.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 292.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 290.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 286.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 283.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 280.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 280.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 280.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 269.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 269.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 264.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 263.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 259.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 258.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 257.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 256.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 256.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 253.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 251.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 247.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 247.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 246.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 244.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 243.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 242.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 238.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 238.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 234.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 233.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 230.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 230.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 227.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 224.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 222.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 222.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 220.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 220.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 220.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 219.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 217.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 216.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 216.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 215.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 215.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 214.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 214.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 214.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 213.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 213.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 212.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 211.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 211.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 210.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 210.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 207.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 207.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 207.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 206.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 205.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 204.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 203.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 202.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 202.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 200.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 199.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 199.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 198.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 197.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 195.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 194.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 194.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 194.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 194.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 193.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 191.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 191.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 190.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 189.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 188.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 188.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 187.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 187.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 187.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 186.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 184.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 183.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 183.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 181.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 181.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 181.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 181.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 180.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 180.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 180.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 179.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 179.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 178.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 178.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 177.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 177.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 176.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 175.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 175.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 175.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 174.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 174.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 173.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 171.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 171.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 170.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 169.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 167.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 167.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 166.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 166.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 165.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 164.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 163.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 163.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 163.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 163.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 163.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 162.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 161.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 161.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 160.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 159.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 158.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 157.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 157.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 156.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 156.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 155.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 155.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 153.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 153.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 153.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 152.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 150.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 150.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 148.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 144.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 143.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 143.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 140.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 136.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 130.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 129.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 126.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 124.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.9
FF:10151-102I7 76 years, female 101.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Pig sample Sample description nTPM
Amygdala
nTPM: 148.0
Samples: 4

Max nTPM: 194.0
Min nTPM: 107.0
Sample A Female 194.0
Sample B Female 156.3
Sample C Male 134.5
Sample D Male 107.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 244.4
Samples: 4

Max nTPM: 255.5
Min nTPM: 240.0
Sample A Male 240.6
Sample B Male 255.5
Sample C Female 241.3
Sample D Female 240.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
68910971 Antisense, RP_050118_02_H06, Mouse strain C57BL/6J (56 days, male) 0.4

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