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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:179.8 nTPM
HPA Brain:61.3 nTPM
GTEx:179.8 nTPM
FANTOM5:100.5 Scaled Tags Per Million
Pig:259.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 53.0
1981 Female, age 72, midline 70.1
2194 Female, age 79, both hemispheres 52.2
2565 Male, age 75, midline 51.3
2816 Male, age 47, midline 46.1
2048 Male, age 55, midline 45.4
Cervical spinal cord, dorsal horn
nTPM: 56.2
2173 Female, age 72, unknown 74.1
2069 Male, age 47, both hemispheres 66.5
2296 Male, age 66, both hemispheres 58.0
2721 Male, age 90, both hemispheres 48.4
2297 Male, age 75, both hemispheres 45.7
1877 Male, age 55, unknown 44.4
Cervical spinal cord, ventral horn
nTPM: 61.3
2480 Male, age 75, both hemispheres 80.5
2098 Female, age 72, unknown 66.8
2809 Male, age 90, both hemispheres 65.6
2295 Male, age 66, both hemispheres 56.1
2068 Male, age 55, unknown 53.3
2820 Female, age 79, both hemispheres 45.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 179.8
Samples: 204

Max nTPM: 286.1
Min nTPM: 112.3
Std nTPM: 31.5
Median nTPM: 174.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 286.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 270.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 263.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 251.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 248.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 246.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 246.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 246.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 244.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 243.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 242.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 239.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 238.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 236.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 235.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 234.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 233.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 232.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 227.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 222.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 219.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 219.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 218.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 216.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 216.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 216.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 215.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 213.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 212.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 212.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 211.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 210.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 206.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 206.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 206.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 206.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 206.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 206.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 204.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 203.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 203.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 201.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 201.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 201.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 200.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 200.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 199.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 199.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 199.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 199.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 197.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 196.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 196.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 196.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 195.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 193.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 193.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 193.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 193.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 192.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 190.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 190.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 189.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 188.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 188.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 188.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 188.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 188.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 187.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 187.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 187.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 186.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 185.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 185.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 184.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 184.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 184.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 184.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 183.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 183.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 183.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 183.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 183.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 182.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 180.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 180.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 180.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 179.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 179.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 177.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 177.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 177.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 176.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 176.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 175.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 174.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 174.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 174.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 173.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 173.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 171.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 171.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 171.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 171.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 171.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 170.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 170.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 169.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 169.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 169.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 169.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 169.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 168.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 168.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 168.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 168.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 168.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 168.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 166.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 166.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 166.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 166.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 166.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 166.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 164.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 164.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 164.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 164.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 164.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 163.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 163.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 163.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 163.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 162.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 161.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 161.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 161.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 161.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 161.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 160.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 160.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 160.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 159.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 158.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 158.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 158.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 157.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 157.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 156.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 154.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 153.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 153.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 153.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 152.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 151.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 150.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 149.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 148.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 148.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 147.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 147.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 147.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 145.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 145.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 142.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 142.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 140.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 140.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 139.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 138.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 135.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 135.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 135.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 134.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 134.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 133.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 133.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 130.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 128.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 127.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 127.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 119.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 112.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.5
FF:10181-103D1 60 years, female 107.1
FF:10159-103A6 76 years, female 93.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 259.3
Samples: 4

Max nTPM: 344.5
Min nTPM: 208.0
Sample A Female 208.0
Sample B Female 272.7
Sample C Male 344.5
Sample D Male 211.8
Ventral spinal cord
nTPM: 246.3
Samples: 4

Max nTPM: 270.5
Min nTPM: 211.9
Sample A Female 211.9
Sample B Female 270.5
Sample C Male 260.1
Sample D Male 242.6

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